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A structural hierarchy mediated by multiple nuclear factors establishes IgH locus conformation.

ABSTRACT: Conformation of antigen receptor gene loci spatially juxtaposes rearranging gene segments in the appropriate cell lineage and developmental stage. We describe a three-step pathway that establishes the structure of the 2.8-Mb immunoglobulin heavy chain gene (IgH) locus in pro-B cells. Each step uses a different transcription factor and leads to increasing levels of structural organization. CTCF mediates one level of compaction that folds the locus into several 250- to 400-kb subdomains, and Pax5 further compacts the 2-Mb region that encodes variable (VH) gene segments. The 5' and 3' domains are brought together by the transcription factor YY1 to establish the configuration within which gene recombination initiates. Such stepwise mechanisms may apply more generally to establish regulatory fine structure within megabase-sized topologically associated domains.

SUBMITTER: Gerasimova T

PROVIDER: S-EPMC4561478 | biostudies-literature | 2015 Aug

REPOSITORIES: biostudies-literature

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A structural hierarchy mediated by multiple nuclear factors establishes IgH locus conformation.

Gerasimova Tatiana T Guo Changying C Ghosh Amalendu A Qiu Xiang X Montefiori Lindsey L Verma-Gaur Jiyoti J Choi Nancy M NM Feeney Ann J AJ Sen Ranjan R

Genes & development 20150801 16

Conformation of antigen receptor gene loci spatially juxtaposes rearranging gene segments in the appropriate cell lineage and developmental stage. We describe a three-step pathway that establishes the structure of the 2.8-Mb immunoglobulin heavy chain gene (IgH) locus in pro-B cells. Each step uses a different transcription factor and leads to increasing levels of structural organization. CTCF mediates one level of compaction that folds the locus into several 250- to 400-kb subdomains, and Pax5 ...[more]

PMID: 26302788

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