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Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43(T) isolated from fermented seafood.

ABSTRACT: An extremely halophilic archaeon, Haladaptatus cibarius D43(T), was isolated from traditional Korean salt-rich fermented seafood. Strain D43(T) shows the highest 16S rRNA gene sequence similarity (98.7 %) with Haladaptatus litoreus RO1-28(T), is Gram-negative staining, motile, and extremely halophilic. Despite potential industrial applications of extremely halophilic archaea, their genome characteristics remain obscure. Here, we describe the whole genome sequence and annotated features of strain D43(T). The 3,926,724 bp genome includes 4,092 protein-coding and 57 RNA genes (including 6 rRNA and 49 tRNA genes) with an average G?+?C content of 57.76 %.

SUBMITTER: Lee HW 

PROVIDER: S-EPMC4571117 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature

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Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43(T) isolated from fermented seafood.

Lee Hae-Won HW   Kim Dae-Won DW   Lee Mi-Hwa MH   Kim Byung-Yong BY   Cho Yong-Joon YJ   Yim Kyung June KJ   Song Hye Seon HS   Rhee Jin-Kyu JK   Seo Myung-Ji MJ   Choi Hak-Jong HJ   Choi Jong-Soon JS   Lee Dong-Gi DG   Yoon Changmann C   Nam Young-Do YD   Roh Seong Woon SW  

Standards in genomic sciences 20150813

An extremely halophilic archaeon, Haladaptatus cibarius D43(T), was isolated from traditional Korean salt-rich fermented seafood. Strain D43(T) shows the highest 16S rRNA gene sequence similarity (98.7 %) with Haladaptatus litoreus RO1-28(T), is Gram-negative staining, motile, and extremely halophilic. Despite potential industrial applications of extremely halophilic archaea, their genome characteristics remain obscure. Here, we describe the whole genome sequence and annotated features of strain  ...[more]

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