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BPE toolkit: toolkit for computational protein engineering.

ABSTRACT: We present a computational toolkit consisting of five utility tools, for performing basic operations on a protein structure file in PDB format. The toolkit consists of five different programs which can be integrated as part of a pipeline for computational protein structure characterization or as a standalone analysis package. The programs include tools for chirality check for amino acids (ProChiral), contact map generation (CoMa), data redundancy (DaRe), hydrogen bond potential energy (HyPE) and electrostatic interaction energy (EsInE). All programs in the toolkit can be accessed and downloaded through the following link: http://www.iitg.ac.in/bpetoolkit/.

SUBMITTER: Jerath G

PROVIDER: S-EPMC4571720 | biostudies-literature | 2014 Dec

REPOSITORIES: biostudies-literature

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bPE toolkit: toolkit for computational protein engineering.

Jerath Gaurav G Hazam Prakash Kishore PK Ramakrishnan Vibin V

Systems and synthetic biology 20141019 4

We present a computational toolkit consisting of five utility tools, for performing basic operations on a protein structure file in PDB format. The toolkit consists of five different programs which can be integrated as part of a pipeline for computational protein structure characterization or as a standalone analysis package. The programs include tools for chirality check for amino acids (ProChiral), contact map generation (CoMa), data redundancy (DaRe), hydrogen bond potential energy (HyPE) and ...[more]

PMID: 26396658

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