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ABSTRACT:
SUBMITTER: Akbal-Delibas B
PROVIDER: S-EPMC4575526 | biostudies-literature | 2015 Sep
REPOSITORIES: biostudies-literature
Akbal-Delibas Bahar B Pomplun Marc M Haspel Nurit N
Journal of computational biology : a journal of computational molecular cell biology 20150901 9
One of the major challenges for protein-protein docking methods is to accurately discriminate nativelike structures. The protein docking community agrees on the existence of a relationship between various favorable intermolecular interactions (e.g. Van der Waals, electrostatic, desolvation forces, etc.) and the similarity of a conformation to its native structure. Different docking algorithms often formulate this relationship as a weighted sum of selected terms and calibrate their weights agains ...[more]