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PyMine: a PyMOL plugin to integrate and visualize data for drug discovery.


ABSTRACT: Tremendous amount of chemical and biological data are being generated by various high-throughput biotechnologies that could facilitate modern drug discovery. However, lack of integration makes it very challenging for individual scientists to access and understand all the data related to a specific protein of interest.To overcome this challenge, we developed PyMine, a PyMOL plugin that retrieves chemical, structural, pathway and other related biological data of a receptor and small molecules from a variety of high-quality databases and presents them in a graphic and uniformed way.Developed as an interactive and user-friendly tool, PyMine can be used as a central data-hub for users to access and visualize multiple types of data and to generate new ideas intuitively for structure-based molecule design.

SUBMITTER: Chaudhari R 

PROVIDER: S-EPMC4590260 | biostudies-literature | 2015 Oct

REPOSITORIES: biostudies-literature

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PyMine: a PyMOL plugin to integrate and visualize data for drug discovery.

Chaudhari Rajan R   Li Zhijun Z  

BMC research notes 20151001


<h4>Background</h4>Tremendous amount of chemical and biological data are being generated by various high-throughput biotechnologies that could facilitate modern drug discovery. However, lack of integration makes it very challenging for individual scientists to access and understand all the data related to a specific protein of interest.<h4>Findings</h4>To overcome this challenge, we developed PyMine, a PyMOL plugin that retrieves chemical, structural, pathway and other related biological data of  ...[more]

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