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A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging.


ABSTRACT: Although high-throughput studies of gene expression have generated large amounts of data, most of which is freely available in public archives, the use of this valuable resource is limited by computational complications and non-homogenous annotation. To address these issues, we have performed a complete re-annotation of public microarray data from human skeletal muscle biopsies and constructed a muscle expression compendium consisting of nearly 3000 samples. The created muscle compendium is a publicly available resource including all curated annotation. Using this data set, we aimed to elucidate the molecular mechanism of muscle aging and to describe how physical exercise may alleviate negative physiological effects.We find 957 genes to be significantly associated with aging (p?

SUBMITTER: Su J 

PROVIDER: S-EPMC4600214 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature

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A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging.

Su Jing J   Ekman Carl C   Oskolkov Nikolay N   Lahti Leo L   Ström Kristoffer K   Brazma Alvis A   Groop Leif L   Rung Johan J   Hansson Ola O  

Skeletal muscle 20151009


<h4>Background</h4>Although high-throughput studies of gene expression have generated large amounts of data, most of which is freely available in public archives, the use of this valuable resource is limited by computational complications and non-homogenous annotation. To address these issues, we have performed a complete re-annotation of public microarray data from human skeletal muscle biopsies and constructed a muscle expression compendium consisting of nearly 3000 samples. The created muscle  ...[more]

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