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Exome Sequencing of an Adult Pituitary Atypical Teratoid Rhabdoid Tumor.


ABSTRACT: Atypical teratoid rhabdoid tumors (AT/RTs) are rare pediatric brain tumors characterized by bialleic loss of the SMARCB1 tumor suppressor gene. In contrast to pediatric AT/RT that has a simple genome, very little is known about the adult AT/RT genomic landscape. Using a combination of whole-exome sequencing and high-resolution SNP array in a single adult pituitary AT/RT, we identified a total of 47 non-synonymous mutations, of which 20 were predicted to cause non-conservative amino acid substitutions, in addition to a subclone of cells with trisomy 8. We suggest that adult AT/RT may not be markedly dissimilar to other adult brain tumors where mutations in a range of genes, reflecting the functional specialization of different brain regions, but including SMARCB1 inactivation, may be required for its pathogenesis.

SUBMITTER: Biswas S 

PROVIDER: S-EPMC4617150 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature

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Exome Sequencing of an Adult Pituitary Atypical Teratoid Rhabdoid Tumor.

Biswas Swethajit S   Wood Madeleine M   Joshi Abhijit A   Bown Nick N   Strain Lisa L   Martinsson Tommy T   Campbell James J   Ashworth Alan A   Swain Amanda A  

Frontiers in oncology 20151023


Atypical teratoid rhabdoid tumors (AT/RTs) are rare pediatric brain tumors characterized by bialleic loss of the SMARCB1 tumor suppressor gene. In contrast to pediatric AT/RT that has a simple genome, very little is known about the adult AT/RT genomic landscape. Using a combination of whole-exome sequencing and high-resolution SNP array in a single adult pituitary AT/RT, we identified a total of 47 non-synonymous mutations, of which 20 were predicted to cause non-conservative amino acid substitu  ...[more]

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