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Unraveling structures of protection ligands on gold nanoparticle Au68(SH)32.

ABSTRACT: New low-energy atomic structures of the thiolate-protected gold nanoparticle Au68(SH)32 are uncovered, where the atomic positions of the Au atoms are taken from the recent single-particle transmission electron microscopy measurement by Kornberg and co-workers, whereas the pattern of thiolate ligands on the gold core is attained on the basis of the generic formulation (or rule) of the "divide and protect" concept. Four distinct low-energy isomers, Iso1 to Iso4, whose structures all satisfy the generic formulation, are predicted. Density-functional theory optimization indicates that the four isomers are all lower in energy by 3 to 4 eV than the state-of-the-art low-energy isomer reported. Further analysis of the optimized structures of Au68(SH)32 shows that the structure of gold core in Iso1 to Iso4 is consistent with the experiment, whereas the positions of a few Au atoms at the surface of gold core are different. The computed optical absorption spectra of the four isomers are consistent with the measured spectrum. Computation of catalytic properties of Au68(SH)32 toward CO oxidation suggests that the magic number cluster can be a stand-alone nanoscale catalyst for future catalytic applications.

SUBMITTER: Xu WW

PROVIDER: S-EPMC4640621 | biostudies-literature | 2015 Apr

REPOSITORIES: biostudies-literature

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Unraveling structures of protection ligands on gold nanoparticle Au68(SH)32.

Xu Wen Wu WW Gao Yi Y Zeng Xiao Cheng XC

Science advances 20150424 3

New low-energy atomic structures of the thiolate-protected gold nanoparticle Au68(SH)32 are uncovered, where the atomic positions of the Au atoms are taken from the recent single-particle transmission electron microscopy measurement by Kornberg and co-workers, whereas the pattern of thiolate ligands on the gold core is attained on the basis of the generic formulation (or rule) of the "divide and protect" concept. Four distinct low-energy isomers, Iso1 to Iso4, whose structures all satisfy the ge ...[more]

PMID: 26601162

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Project description:FMRFamide-like peptide (FLP) signalling systems are core to nematode neuromuscular function. Novel drug discovery efforts associated with nematode FLP/FLP receptor biology are advanced through the accumulation of basic biological data that can reveal subtle complexities within the neuropeptidergic system. This study reports the characterisation of FMRFamide-like peptide encoding gene-11 (flp-11) and FMRFamide-like peptide encoding gene-32 (flp-32), two distinct flp genes which encode the analogous peptide, AMRN(A/S)LVRFamide, in multiple nematode species - the only known example of this phenomenon within the FLPergic system of nematodes. Using bioinformatics, in situ hybridisation, immunocytochemistry and behavioural assays we show that: (i) flp-11 and -32 are distinct flp genes expressed individually or in tandem across multiple nematode species, where they encode a highly similar peptide; (ii) flp-11 does not appear to be the most widely expressed flp in Caenorhabditis elegans; (iii) in species expressing both flp-11 and flp-32, flp-11 displays a conserved, restricted expression pattern across nematode clades and lifestyles; (iv) in species expressing both flp-11 and flp-32, flp-32 expression is more widespread and less conserved than flp-11; (v) in species expressing only flp-11, the flp-11 expression profile is more similar to the flp-32 profile observed in species expressing both; and (vi) FLP-11 peptides inhibit motor function in multiple nematode species. The biological significance and evolutionary origin of flp-11 and -32 peptide duplication remains unclear despite attempts to identify a common ancestor; this may become clearer as the availability of genomic data improves. This work provides insight into the complexity of the neuropeptidergic system in nematodes, and begins to examine how nematodes may compensate for structural neuronal simplicity. From a parasite control standpoint, this work underscores the importance of basic biological data, and has wider implications for the utility of C. elegans as a model for parasite neurobiology.

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Unraveling structures of protection ligands on gold nanoparticle Au68(SH)32.

Publications

Unraveling structures of protection ligands on gold nanoparticle Au68(SH)32.

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