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Genome-wide analyses suggest parallel selection for universal traits may eclipse local environmental selection in a highly mobile carnivore.

ABSTRACT: Ecological and environmental heterogeneity can produce genetic differentiation in highly mobile species. Accordingly, local adaptation may be expected across comparatively short distances in the presence of marked environmental gradients. Within the European continent, wolves (Canis lupus) exhibit distinct north-south population differentiation. We investigated more than 67-K single nucleotide polymorphism (SNP) loci for signatures of local adaptation in 59 unrelated wolves from four previously identified population clusters (northcentral Europe n = 32, Carpathian Mountains n = 7, Dinaric-Balkan n = 9, Ukrainian Steppe n = 11). Our analyses combined identification of outlier loci with findings from genome-wide association study of individual genomic profiles and 12 environmental variables. We identified 353 candidate SNP loci. We examined the SNP position and neighboring megabase (1 Mb, one million bases) regions in the dog (C. lupus familiaris) genome for genes potentially under selection, including homologue genes in other vertebrates. These regions included functional genes for, for example, temperature regulation that may indicate local adaptation and genes controlling for functions universally important for wolves, including olfaction, hearing, vision, and cognitive functions. We also observed strong outliers not associated with any of the investigated variables, which could suggest selective pressures associated with other unmeasured environmental variables and/or demographic factors. These patterns are further supported by the examination of spatial distributions of the SNPs associated with universally important traits, which typically show marked differences in allele frequencies among population clusters. Accordingly, parallel selection for features important to all wolves may eclipse local environmental selection and implies long-term separation among population clusters.

SUBMITTER: Stronen AV

PROVIDER: S-EPMC4667828 | biostudies-literature | 2015 Oct

REPOSITORIES: biostudies-literature

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Genome-wide analyses suggest parallel selection for universal traits may eclipse local environmental selection in a highly mobile carnivore.

Stronen Astrid Vik AV Jędrzejewska Bogumiła B Pertoldi Cino C Demontis Ditte D Randi Ettore E Niedziałkowska Magdalena M Borowik Tomasz T Sidorovich Vadim E VE Kusak Josip J Kojola Ilpo I Karamanlidis Alexandros A AA Ozolins Janis J Dumenko Vitalii V Czarnomska Sylwia D SD

Ecology and evolution 20150922 19

Ecological and environmental heterogeneity can produce genetic differentiation in highly mobile species. Accordingly, local adaptation may be expected across comparatively short distances in the presence of marked environmental gradients. Within the European continent, wolves (Canis lupus) exhibit distinct north-south population differentiation. We investigated more than 67-K single nucleotide polymorphism (SNP) loci for signatures of local adaptation in 59 unrelated wolves from four previously ...[more]

PMID: 26664688

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Project description:BackgroundGlobal increases in human activity threaten connectivity of animal habitat and populations. Protection and restoration of wildlife habitat and movement corridors require robust models to forecast the effects of human activity on movement behaviour, resource selection, and connectivity. Recent research suggests that animal resource selection and responses to human activity depend on their behavioural movement state, with increased tolerance for human activity in fast states of movement. Yet, few studies have incorporated state-dependent movement behaviour into analyses of Merriam connectivity, that is individual-based metrics of connectivity that incorporate landscape structure and movement behaviour.MethodsWe assessed the cumulative effects of anthropogenic development on multiple movement processes including movement behaviour, resource selection, and Merriam connectivity. We simulated movement paths using hidden Markov movement models and step selection functions to estimate habitat use and connectivity for three landscape scenarios: reference conditions with no anthropogenic development, current conditions, and future conditions with a simulated expansion of towns and recreational trails. Our analysis used 20 years of grizzly bear (Ursus arctos) and gray wolf (Canis lupus) movement data collected in and around Banff National Park, Canada.ResultsCarnivores increased their speed of travel near towns and areas of high trail and road density, presumably to avoid encounters with people. They exhibited stronger avoidance of anthropogenic development when foraging and resting compared to travelling and during the day compared to night. Wolves exhibited stronger avoidance of anthropogenic development than grizzly bears. Current development reduced the amount of high-quality habitat between two mountain towns by more than 35%. Habitat degradation constrained movement routes around towns and was most pronounced for foraging and resting behaviour. Current anthropogenic development reduced connectivity from reference conditions an average of 85%. Habitat quality and connectivity further declined under a future development scenario.ConclusionsOur results highlight the cumulative effects of anthropogenic development on carnivore movement behaviour, habitat use, and connectivity. Our strong behaviour-specific responses to human activity suggest that conservation initiatives should consider how proposed developments and restoration actions would affect where animals travel and how they use the landscape.

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Genome-wide analyses suggest parallel selection for universal traits may eclipse local environmental selection in a highly mobile carnivore.

Publications

Genome-wide analyses suggest parallel selection for universal traits may eclipse local environmental selection in a highly mobile carnivore.

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