Dataset Information

Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics.

ABSTRACT: The Kiwifruit Information Resource (KIR) is dedicated to maintain and integrate comprehensive datasets on genomics, functional genomics and transcriptomics of kiwifruit (Actinidiaceae). KIR serves as a central access point for existing/new genomic and genetic data. KIR also provides researchers with a variety of visualization and analysis tools. Current developments include the updated genome structure of Actinidia chinensis cv. Hongyang and its newest genome annotation, putative transcripts, gene expression, physical markers of genetic traits as well as relevant publications based on the latest genome assembly. Nine thousand five hundred and forty-seven new transcripts are detected and 21 132 old transcripts are changed. At the present release, the next-generation transcriptome sequencing data has been incorporated into gene models and splice variants. Protein-protein interactions are also identified based on experimentally determined orthologous interactions. Furthermore, the experimental results reported in peer-reviewed literature are manually extracted and integrated within a well-developed query page. In total, 122 identifications are currently associated, including commonly used gene names and symbols. All KIR datasets are helpful to facilitate a broad range of kiwifruit research topics and freely available to the research community. Database URL: http://bdg.hfut.edu.cn/kir/index.html.

SUBMITTER: Yue J

PROVIDER: S-EPMC4674624 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature

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Publications

Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics.

Yue Junyang J Liu Jian J Ban Rongjun R Tang Wei W Deng Lin L Fei Zhangjun Z Liu Yongsheng Y

Database : the journal of biological databases and curation 20151209

The Kiwifruit Information Resource (KIR) is dedicated to maintain and integrate comprehensive datasets on genomics, functional genomics and transcriptomics of kiwifruit (Actinidiaceae). KIR serves as a central access point for existing/new genomic and genetic data. KIR also provides researchers with a variety of visualization and analysis tools. Current developments include the updated genome structure of Actinidia chinensis cv. Hongyang and its newest genome annotation, putative transcripts, ge ...[more]

PMID: 26656885

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Dataset Information

Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics.

Publications

Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics.

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