Dataset Information

Diversity of Ammonia Oxidation (amoA) and Nitrogen Fixation (nifH) Genes in Lava Caves of Terceira, Azores, Portugal.

ABSTRACT: Lava caves are an understudied ecosystem in the subterranean world, particularly in regard to nitrogen cycling. The diversity of ammonia oxidation (amoA) and nitrogen fixation (nifH) genes in bacterial mats collected from lava cave walls on the island of Terceira (Azores, Portugal) was investigated using denaturing gradient gel electrophoresis (DGGE). A total of 55 samples were collected from 11 lava caves that were selected with regard to surface land use. Land use types above the lava caves were categorized into pasture, forested, and sea/urban, and used to determine if land use influenced the ammonia oxidizing and nitrogen fixing bacterial communities within the lava caves. The soil and water samples from each lava cave were analyzed for total organic carbon, inorganic carbon, total nitrogen, ammonium, nitrate, phosphate and sulfate, to determine if land use influences either the nutrient content entering the lava cave or the nitrogen cycling bacteria present within the cave. Nitrosospira-like sequences dominated the ammonia-oxidizing bacteria (AOB) community, and the majority of the diversity was found in lava caves under forested land. The nitrogen fixation community was dominated by Klebsiella pneumoniae-like sequences, and diversity was evenly distributed between pasture and forested land, but very little overlap in diversity was observed. The results suggest that land use is impacting both the AOB and the nitrogen fixing bacterial communities.

SUBMITTER: Hathaway JJ

PROVIDER: S-EPMC4711379 | biostudies-literature | 2014

REPOSITORIES: biostudies-literature

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Diversity of Ammonia Oxidation (amoA) and Nitrogen Fixation (nifH) Genes in Lava Caves of Terceira, Azores, Portugal.

Hathaway Jennifer J Marshall JJ Sinsabaugh Robert L RL Dapkevicius Maria De Lurdes N E ML Northup Diana E DE

Geomicrobiology journal 20130213 3

Lava caves are an understudied ecosystem in the subterranean world, particularly in regard to nitrogen cycling. The diversity of ammonia oxidation (amoA) and nitrogen fixation (nifH) genes in bacterial mats collected from lava cave walls on the island of Terceira (Azores, Portugal) was investigated using denaturing gradient gel electrophoresis (DGGE). A total of 55 samples were collected from 11 lava caves that were selected with regard to surface land use. Land use types above the ...[more]

PMID: 26778867

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Project description:BackgroundThis manuscript is the first contribution of the project, "Matela - uma ilha de biodiversidade" ("Matela - an island of biodiversity"), that aims to restore the native vegetation within the Azorean Protected Area of the Terceira Island Nature Park known as the "Protected Area for the Management of Habitats or Species of Matela" (TER08), situated on Terceira Island, the Azores Archipelago, Portugal. This small fragment of native forest, positioned at a low-medium altitude (300-400 m a.s.l.), is facing some conservation impacts as a consequence of the spread of different invasive exotic plant species, mainly Pittosporumundulatum, Rubusulmifolius and Hedychiumgardnerianum. The database we present encompasses diverse taxonomic groups, including bryophytes, vascular plants, arthropods, birds and mammals. It is derived from intensive sampling campaigns conducted in 2022, but some data from a previous vascular plant survey in 2015 were also included. The objective of this study was to provide an updated inventory of bryophytes, vascular plants, arthropods, birds and mammals within this protected area. In this way we are providing the reference conditions necessary for the monitoring of the impacts of the current ongoing restoration efforts within the project "Matela - an island of biodiversity". Whenever feasible, the present inventory is juxtaposed with historical data from previous surveys conducted in Matela.New informationIn the realm of bryophytes, our analysis revealed the presence of 75 taxa, comprising 44 mosses and 32 liverworts. Amongst these, 71 were indigenous, while three remained indeterminate and one, Campylopusintroflexus, was identified as invasive. A comparison with previous historical data revealed a decrease in species richness, which was partially counterbalanced by the discovery of 23 new recorded species in the area.Regarding vascular plants, we distinguished 54 species, comprising 28 indigenous and 26 introduced taxa. Almost 80% of the inventoried species (n = 43) were newly documented in Matela.The study of arthropods encompassed a total of 103 taxa. Within the realm of soil arthropods, we documented eight indigenous and 25 introduced taxa, witnessing the disappearance of endemic species alongside a substantial increase in introduced ones between 2002 and 2022. Canopy arthropods, totalling 36 indigenous and 18 introduced taxa, exhibited few changes when compared with data from 2002. SLAM traps captured 24 indigenous and 15 introduced arthropod taxa and no historical data are available for comparison.As for avian species, we noted 12 indigenous birds and one introduced species, confirming the presence of most of the historical recorded native species.The mammalian census revealed eight introduced species, setting new precedents for Matela, alongside the identification of one endemic species: the Azorean endemic bat Nyctalusazoreum.

Project description:BackgroundDuring a LIFE research project aiming at the implementation of the conservation of the habitats and restoration of coastal wetland areas of Praia da Vitória (Terceira, Azores, Portugal), there was the opportunity undertake a systematic record of several groups of arthropods in three wetland areas: Paul da Praia da Vitória (PPV), Paul do Belo Jardim (PBJ) and Paul da Pedreira do Cabo da Praia (PPCP). The objective of the study was to perform a rapid biodiversity assessment, comparing the three sites in two different years, before and after the implementation of several conservation measures. This project also contributed to improve the knowledge of Azorean arthropod diversity at both local and regional scales, including new taxa for Terceira island and new records for Azores. Taking into consideration those aims, a set of standardised sampling methods were performed, inspired by the COBRA protocol originally developed for spiders.New informationA total of 15,810 specimens belonging to 216 arthropod species and subspecies were collected. Beetles (Insecta, Coleoptera) and spiders (Araneae) dominated, with 81 and 51 taxa, respectively. Two beetle families dominated, Staphylinidae and Curculionidae with, respectively, 22 and 17 species and subspecies. Exotic species were also dominant (132 species and subspecies), the Azorean endemics being restricted to only eight taxa. The remaining 76 species and subspecies are native non-endemic. Two rare endemic species were found with relatively sustainable populations, the Azores Cone-head Conocephalus chavesi (Orthoptera, Tettigoniidae) and the true weevil Drouetius oceanicus oceanicus (Coleoptera, Curculionidae). A total of six species are novel for the Azores, five exotic (Bledius unicornis, Carpelimus zealandicus, Oenopia doublieri, Sitona hispidulus, Trichiusa immigrata) and one possibly native (Pyrrhocoris apterus). An additional 15 taxa are novel for Terceira island, ten exotic (Cheiracanthium mildei, Cylindroiulus latestriatus, Eumodicogryllus bordigalensis, Nemobius sylvestris, Pissodes castaneus, Psyllipsocus ramburi, Trachyzelotes lyonneti, Trigonnidium cicindeloides, Tychius cuprifer, Zelotes tenuis) and five native (Aegialia arenaria, Oxypoda lurida, Platycleis sabulosa, Plinthisus brevipennis, Tachyura diabrachys).

Dataset Information

Diversity of Ammonia Oxidation (amoA) and Nitrogen Fixation (nifH) Genes in Lava Caves of Terceira, Azores, Portugal.

Publications

Diversity of Ammonia Oxidation (<i>amoA</i>) and Nitrogen Fixation (<i>nifH</i>) Genes in Lava Caves of Terceira, Azores, Portugal.

Similar Datasets

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