Ontology highlight
ABSTRACT:
SUBMITTER: Zhang R
PROVIDER: S-EPMC4744958 | biostudies-literature | 2015 Oct
REPOSITORIES: biostudies-literature
Zhang Runxuan R Calixto Cristiane P G CP Tzioutziou Nikoleta A NA James Allan B AB Simpson Craig G CG Guo Wenbin W Marquez Yamile Y Kalyna Maria M Patro Rob R Eyras Eduardo E Barta Andrea A Nimmo Hugh G HG Brown John W S JW
The New phytologist 20150625 1
RNA-sequencing (RNA-seq) allows global gene expression analysis at the individual transcript level. Accurate quantification of transcript variants generated by alternative splicing (AS) remains a challenge. We have developed a comprehensive, nonredundant Arabidopsis reference transcript dataset (AtRTD) containing over 74 000 transcripts for use with algorithms to quantify AS transcript isoforms in RNA-seq. The AtRTD was formed by merging transcripts from TAIR10 and novel transcripts identified i ...[more]