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RVFam: an R package for rare variant association analysis with family data.

ABSTRACT: Family-based designs offer unique advantage for identifying rare risk variants in genetic association studies. There are existing tools for analyzing rare variants in families but lacking components to handle binary traits properly and survival traits. In this report, we introduce an R software package RVFam (Rare Variant association analysis with Family data) designed to analyze continuous, binary and survival traits against rare and common sequencing variants in genome-wide association studies (GWAS) involving family data. Single and multiple variant association tests were implemented while accounting for arbitrary family structures. Extensive simulation studies were performed to evaluate all the approaches implemented in RVFam.http://cran.r-project.org/web/packages/RVFam/.

SUBMITTER: Chen MH

PROVIDER: S-EPMC4757926 | biostudies-literature | 2016 Feb

REPOSITORIES: biostudies-literature

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RVFam: an R package for rare variant association analysis with family data.

Chen Ming-Huei MH Yang Qiong Q

Bioinformatics (Oxford, England) 20151027 4

<h4>Unlabelled</h4>Family-based designs offer unique advantage for identifying rare risk variants in genetic association studies. There are existing tools for analyzing rare variants in families but lacking components to handle binary traits properly and survival traits. In this report, we introduce an R software package RVFam (Rare Variant association analysis with Family data) designed to analyze continuous, binary and survival traits against rare and common sequencing variants in genome-wide ...[more]

PMID: 26508760

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