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Parallel declines in species and genetic diversity driven by anthropogenic disturbance: a multispecies approach in a French Atlantic dune system.

ABSTRACT: Numerous studies assess the correlation between genetic and species diversities, but the processes underlying the observed patterns have only received limited attention. For instance, varying levels of habitat disturbance across a region may locally reduce both diversities due to extinctions, and increased genetic drift during population bottlenecks and founder events. We investigated the regional distribution of genetic and species diversities of a coastal sand dune plant community along 240 kilometers of coastline with the aim to test for a correlation between the two diversity levels. We further quantify and tease apart the respective contributions of natural and anthropogenic disturbance factors to the observed patterns. We detected significant positive correlation between both variables. We further revealed a negative impact of urbanization: Sites with a high amount of recreational infrastructure within 10 km coastline had significantly lowered genetic and species diversities. On the other hand, a measure of natural habitat disturbance had no effect. This study shows that parallel variation of genetic and species diversities across a region can be traced back to human landscape alteration, provides arguments for a more resolute dune protection, and may help to design priority conservation areas.

SUBMITTER: Frey D

PROVIDER: S-EPMC4778109 | biostudies-literature | 2016 Mar

REPOSITORIES: biostudies-literature

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Parallel declines in species and genetic diversity driven by anthropogenic disturbance: a multispecies approach in a French Atlantic dune system.

Frey David D Arrigo Nils N Granereau Gilles G Sarr Anouk A Felber François F Kozlowski Gregor G

Evolutionary applications 20160127 3

Numerous studies assess the correlation between genetic and species diversities, but the processes underlying the observed patterns have only received limited attention. For instance, varying levels of habitat disturbance across a region may locally reduce both diversities due to extinctions, and increased genetic drift during population bottlenecks and founder events. We investigated the regional distribution of genetic and species diversities of a coastal sand dune plant community along 240 ki ...[more]

PMID: 26989439

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Project description:In the Anthropocene, understanding the impacts of anthropogenic influence on biodiversity and behavior of vulnerable wildlife communities is increasingly relevant to effective conservation. However, comparative studies aimed at disentangling the concurrent effect of different types of human disturbance on multifaceted biodiversity and on activity patterns of mammals are surprisingly rare. We applied a multiregion community model to separately estimate the effects of cumulative human modification (e.g., settlement, agriculture, and transportation) and human presence (aggregated presence of dogs, people, and livestock) on species richness and functional composition of medium- and large-bodied mammals based on camera trap data collected across 45 subtropical montane forests. We divided the detected mammal species into three trophic guilds-carnivores, herbivores, and omnivores-and assessed the nocturnal shifts of each guild in response to anthropogenic activities. Overall, species richness tended to increase (β coefficient = 0.954) as human modification increased but richness decreased as human presence increased (β = -1.054). Human modification was associated with significantly lower functional diversity (mean nearest taxon distance [MNTD], β = -0.134; standardized effect sizes of MNTD, β = -0.397), community average body mass (β = -0.240), and proportion of carnivores (β = -0.580). Human presence was associated with a strongly reduced proportion of herbivores (β = -0.522), whereas proportion of omnivores significantly increased as human presence (β = 0.378) and habitat modification (β = 0.419) increased. In terms of activity patterns, omnivores (β = 12.103) and carnivores (β = 9.368) became more nocturnal in response to human modification. Our results suggest that human modification and human presence have differing effects on mammals and demonstrate that anthropogenic disturbances can lead to drastic loss of functional diversity and result in a shift to nocturnal behavior of mammals. Conservation planning should consider concurrent effects of different types of human disturbance on species richness, functional diversity, and behavior of wildlife communities.

Project description:The margay (Leopardus wiedii) is a small Neotropical arboreal wild cat. This species is thought to be forest-dependent, although few studies so far have directly evaluated the relationships between spatiotemporal aspects of its ecology and landscape characteristics. The aim of this study was to estimate margay population density and activity patterns in six areas with different habitat types and levels of anthropogenic disturbance in the southernmost Atlantic Forest of Brazil. Our working hypothesis was that density and activity patterns differed between areas in response to differences in forest cover and anthropogenic disturbance. Margay records were obtained using camera trapping, during spring and summer from 2017 to 2019. In all areas, the sampling scheme consisted of 20 un-baited stations, set 1km apart, each containing two paired cameras. We assessed the potential effects of environmental variables, including anthropogenic factors, on margay density, rate of detection and space use by comparing nine spatial capture-recapture (SCR) models. Activity patterns of the margay, its potential prey, and competitors were described and compared using the date and time of the records. We obtained 66 records of margay. Two of the six sampled areas were excluded from subsequent analyses due to the small number of records. The density estimated by the top-ranked model varied from 9.6±6.4 individuals/100km2 in the area with the highest human disturbance to 37.4±15.1 individuals/100km2 in a less disturbed area. Margay densities responded positively to vegetation cover, supporting the hypothesis of forest dependence by the species. Both the margay and their potential prey (small rodents and marsupials) were found to be mostly nocturnal. Margay activity also overlapped with that of the ocelot, Leopardus pardalis, and with mammals associated with human presence (wild boar, cattle, domestic dogs and cats). This is the first multi-area study on patterns of density and activity of the margay in the Brazilian Atlantic Forest. We concluded that the margay is mostly nocturnal, and while its densities are positively influenced by forest cover and negatively influenced by human disturbance, the activity pattern of the species does not seem to change across landscapes with distinct levels of human modification. Margay populations seem to be able to persist under moderate levels of habitat modification, highlighting the importance of preserving even small native forest remnants in the highly fragmented Atlantic Forest.

Project description:BackgroundDuring past glacial periods, many species of forest-dwelling animals experienced range contractions. In contrast, species living outside such moist habitats appear to have reacted to Quaternary changes in different ways. The Atlantic Forest represents an excellent opportunity to test phylogeographic hypotheses, because it has a wide range of vegetation types, including unforested habitats covered predominantly by herbaceous and shrubby plants, which are strongly influenced by the harsh environment with strong wind and high insolation. Here, we investigated the distribution of genetic diversity in the endemic sand dune ant Mycetophylax simplex across its known range along the Brazilian coast, with the aim of contributing to the understanding of alternative phylogeographic patterns. We used partial sequences of the mitochondrial gene cytochrome oxidase I and nuclear gene wingless from 108 specimens and 51 specimens, respectively, to assess the phylogeography and demographic history of this species. To achieve this we performed different methods of phylogenetic and standard population genetic analyses.ResultsThe observed genetic diversity distribution and historical demographic profile suggests that the history of M. simplex does not match the scenario suggested for other Atlantic Forest species. Instead, it underwent demographic changes and range expansions during glacial periods. Our results show that M. simplex presents a shallow phylogeographic structure with isolation by distance among the studied populations, living in an almost panmictic population. Our coalescence approach indicates that the species maintained a stable population size until roughly 75,000 years ago, when it underwent a gradual demographic expansion that were coincident with the low sea-level during the Quaternary. Such demographic events were likely triggered by the expansion of the shorelines during the lowering of the sea level.ConclusionsOur data suggest that over evolutionary time M. simplex did not undergo dramatic range fragmentation, but rather it likely persisted in largely interconnected populations. Furthermore, we add an important framework about how both glacial and interglacial events could positively affect the distribution and diversification of species. The growing number of contrasting phylogeographic patterns within and among species and regions have shown that Quaternary events influenced the distribution of species in more ways than first supposed.

Dataset Information

Parallel declines in species and genetic diversity driven by anthropogenic disturbance: a multispecies approach in a French Atlantic dune system.

Publications

Parallel declines in species and genetic diversity driven by anthropogenic disturbance: a multispecies approach in a French Atlantic dune system.

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