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Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array.


ABSTRACT: Recently, for copy number variation (CNV) analysis, bovine researchers have focused mainly on the use of genome-wide SNP genotyping arrays. One of the highest densities commercially available SNPchips for cattle is the Affymetrix axiom genome-wide Bos 1, which assays 648,315 informative SNPs across the whole bovine genome. Here, we describe the microarray data, quality controls and validation implemented in a study published in Genetics and Molecular Research Journal in 2015 [1]. The microarray raw data has been deposited into Gene Expression Omnibus under accession #GSE54813.

SUBMITTER: Salomon-Torres R 

PROVIDER: S-EPMC4778655 | biostudies-literature | 2016 Mar

REPOSITORIES: biostudies-literature

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Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array.

Salomon-Torres Ricardo R   Villa-Angulo Rafael R   Villa-Angulo Carlos C  

Genomics data 20151217


Recently, for copy number variation (CNV) analysis, bovine researchers have focused mainly on the use of genome-wide SNP genotyping arrays. One of the highest densities commercially available SNPchips for cattle is the Affymetrix axiom genome-wide Bos 1, which assays 648,315 informative SNPs across the whole bovine genome. Here, we describe the microarray data, quality controls and validation implemented in a study published in Genetics and Molecular Research Journal in 2015 [1]. The microarray  ...[more]

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