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Data publication with the structural biology data grid supports live analysis.


ABSTRACT: Access to experimental X-ray diffraction image data is fundamental for validation and reproduction of macromolecular models and indispensable for development of structural biology processing methods. Here, we established a diffraction data publication and dissemination system, Structural Biology Data Grid (SBDG; data.sbgrid.org), to preserve primary experimental data sets that support scientific publications. Data sets are accessible to researchers through a community driven data grid, which facilitates global data access. Our analysis of a pilot collection of crystallographic data sets demonstrates that the information archived by SBDG is sufficient to reprocess data to statistics that meet or exceed the quality of the original published structures. SBDG has extended its services to the entire community and is used to develop support for other types of biomedical data sets. It is anticipated that access to the experimental data sets will enhance the paradigm shift in the community towards a much more dynamic body of continuously improving data analysis.

SUBMITTER: Meyer PA 

PROVIDER: S-EPMC4786681 | biostudies-literature | 2016 Mar

REPOSITORIES: biostudies-literature

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Data publication with the structural biology data grid supports live analysis.

Meyer Peter A PA   Socias Stephanie S   Key Jason J   Ransey Elizabeth E   Tjon Emily C EC   Buschiazzo Alejandro A   Lei Ming M   Botka Chris C   Withrow James J   Neau David D   Rajashankar Kanagalaghatta K   Anderson Karen S KS   Baxter Richard H RH   Blacklow Stephen C SC   Boggon Titus J TJ   Bonvin Alexandre M J J AM   Borek Dominika D   Brett Tom J TJ   Caflisch Amedeo A   Chang Chung-I CI   Chazin Walter J WJ   Corbett Kevin D KD   Cosgrove Michael S MS   Crosson Sean S   Dhe-Paganon Sirano S   Di Cera Enrico E   Drennan Catherine L CL   Eck Michael J MJ   Eichman Brandt F BF   Fan Qing R QR   Ferré-D'Amaré Adrian R AR   Fromme J Christopher JC   Garcia K Christopher KC   Gaudet Rachelle R   Gong Peng P   Harrison Stephen C SC   Heldwein Ekaterina E EE   Jia Zongchao Z   Keenan Robert J RJ   Kruse Andrew C AC   Kvansakul Marc M   McLellan Jason S JS   Modis Yorgo Y   Nam Yunsun Y   Otwinowski Zbyszek Z   Pai Emil F EF   Pereira Pedro José Barbosa PJ   Petosa Carlo C   Raman C S CS   Rapoport Tom A TA   Roll-Mecak Antonina A   Rosen Michael K MK   Rudenko Gabby G   Schlessinger Joseph J   Schwartz Thomas U TU   Shamoo Yousif Y   Sondermann Holger H   Tao Yizhi J YJ   Tolia Niraj H NH   Tsodikov Oleg V OV   Westover Kenneth D KD   Wu Hao H   Foster Ian I   Fraser James S JS   Maia Filipe R N C FR   Gonen Tamir T   Kirchhausen Tom T   Diederichs Kay K   Crosas Mercè M   Sliz Piotr P  

Nature communications 20160307


Access to experimental X-ray diffraction image data is fundamental for validation and reproduction of macromolecular models and indispensable for development of structural biology processing methods. Here, we established a diffraction data publication and dissemination system, Structural Biology Data Grid (SBDG; data.sbgrid.org), to preserve primary experimental data sets that support scientific publications. Data sets are accessible to researchers through a community driven data grid, which fac  ...[more]

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