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Entropy-driven formation of chiral nematic phases by computer simulations.

ABSTRACT: Predicting the macroscopic chiral behaviour of liquid crystals from the microscopic chirality of the particles is highly non-trivial, even when the chiral interactions are purely entropic in nature. Here we introduce a novel chiral hard-particle model, namely particles with a twisted polyhedral shape and obtain a stable fully entropy-driven cholesteric phase by computer simulations. By slightly modifying the triangular base of the particle, we are able to switch from a left-handed prolate (calamitic) to a right-handed oblate (discotic) cholesteric phase using the same right-handed twisted particle model. Furthermore, we show that not only prolate and oblate chiral nematic phases, but also other novel entropy-driven phases, namely chiral blue phases, chiral nematic phases featuring both twist and splay deformations, chiral biaxial nematic phases with one of the axes twisted, can be obtained by varying particle biaxiality and chirality. Our results allow to identify general guidelines for the stabilization of these phases.

SUBMITTER: Dussi S

PROVIDER: S-EPMC4832067 | biostudies-literature | 2016 Apr

REPOSITORIES: biostudies-literature

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Entropy-driven formation of chiral nematic phases by computer simulations.

Dussi Simone S Dijkstra Marjolein M

Nature communications 20160412

Predicting the macroscopic chiral behaviour of liquid crystals from the microscopic chirality of the particles is highly non-trivial, even when the chiral interactions are purely entropic in nature. Here we introduce a novel chiral hard-particle model, namely particles with a twisted polyhedral shape and obtain a stable fully entropy-driven cholesteric phase by computer simulations. By slightly modifying the triangular base of the particle, we are able to switch from a left-handed prolate (calam ...[more]

PMID: 27067806

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Project description:Biological processes require DNA and RNA helices to pack together in specific interhelical orientations. While electrostatic repulsion between backbone charges is expected to be maximized when helices are in parallel alignment, such orientations are commonplace in nature. To better understand how the repulsion is overcome, we used experimental and computational approaches to investigate how the orientational preferences of DNA helices depend on the concentration and valence of mobile cations. We used Förster resonance energy transfer (FRET) to probe the relative orientations of two 24-bp helices held together via a freely rotating PEG linker. At low cation concentrations, the helices preferred more "cross"-like orientations over those closer to parallel, and this preference was reduced with increasing salt concentrations. The results were in good quantitative agreement with Poisson-Boltzmann (PB) calculations for monovalent salt (Na+). However, PB underestimated the ability of mixtures of monovalent and divalent ions (Mg2+) to reduce the conformational preference. As a complementary approach, we performed all-atom molecular dynamics (MD) simulations and found better agreement with the experimental results. While MD and PB predict similar electrostatic forces, MD predicts a greater accumulation of Mg2+ in the ion atmosphere surrounding the DNA. Mg2+ occupancy is predicted to be greater in conformations close to the parallel orientation than in conformations close to the crossed orientation, enabling a greater release of Na+ ions and providing an entropic gain (one bound ion for two released). MD predicts an entropy gain larger than that of PB because of the increased Mg2+ occupancy. The entropy changes have a negligible effect at low Mg2+ concentrations because the free energies are dominated by electrostatic repulsion. However, as the Mg2+ concentration increases, charge screening is more effective and the mixing entropy produces readily detectable changes in packing preferences. Our results underline the importance of mixing entropy of counterions in nucleic acid interactions and provide a new understanding on the impact of a mixed ion atmosphere on the packing of DNA helices.

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Entropy-driven formation of chiral nematic phases by computer simulations.

Publications

Entropy-driven formation of chiral nematic phases by computer simulations.

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