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Haplogroup Classification of Korean Cattle Breeds Based on Sequence Variations of mtDNA Control Region.


ABSTRACT: Many studies have reported the frequency and distribution of haplogroups among various cattle breeds for verification of their origins and genetic diversity. In this study, 318 complete sequences of the mtDNA control region from four Korean cattle breeds were used for haplogroup classification. 71 polymorphic sites and 66 haplotypes were found in these sequences. Consistent with the genetic patterns in previous reports, four haplogroups (T1, T2, T3, and T4) were identified in Korean cattle breeds. In addition, T1a, T3a, and T3b sub-haplogroups were classified. In the phylogenetic tree, each haplogroup formed an independent cluster. The frequencies of T3, T4, T1 (containing T1a), and T2 were 66%, 16%, 10%, and 8%, respectively. Especially, the T1 haplogroup contained only one haplotype and a sample. All four haplogroups were found in Chikso, Jeju black and Hanwoo. However, only the T3 and T4 haplogroups appeared in Heugu, and most Chikso populations showed a partial of four haplogroups. These results will be useful for stable conservation and efficient management of Korean cattle breeds.

SUBMITTER: Kim JH 

PROVIDER: S-EPMC4852222 | biostudies-literature | 2016 May

REPOSITORIES: biostudies-literature

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Haplogroup Classification of Korean Cattle Breeds Based on Sequence Variations of mtDNA Control Region.

Kim Jae-Hwan JH   Lee Seong-Su SS   Kim Seung Chang SC   Choi Seong-Bok SB   Kim Su-Hyun SH   Lee Chang Woo CW   Jung Kyoung-Sub KS   Kim Eun Sung ES   Choi Young-Sun YS   Kim Sung-Bok SB   Kim Woo Hyun WH   Cho Chang-Yeon CY  

Asian-Australasian journal of animal sciences. 20160105 5


Many studies have reported the frequency and distribution of haplogroups among various cattle breeds for verification of their origins and genetic diversity. In this study, 318 complete sequences of the mtDNA control region from four Korean cattle breeds were used for haplogroup classification. 71 polymorphic sites and 66 haplotypes were found in these sequences. Consistent with the genetic patterns in previous reports, four haplogroups (T1, T2, T3, and T4) were identified in Korean cattle breed  ...[more]

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