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A data-driven concept schema for defining clinical research data needs.

ABSTRACT: The Patient, Intervention, Control/Comparison, and Outcome (PICO) framework is an effective technique for framing a clinical question. We aim to develop the counterpart of PICO to structure clinical research data needs.We use a data-driven approach to abstracting key concepts representing clinical research data needs by adapting and extending an expert-derived framework originally developed for defining cancer research data needs. We annotated clinical trial eligibility criteria, EHR data request logs, and data queries to electronic health records (EHR), to extract and harmonize concept classes representing clinical research data needs. We evaluated the class coverage, class preservation from the original framework, schema generalizability, schema understandability, and schema structural correctness through a semi-structured interview with eight multidisciplinary domain experts. We iteratively refined the schema based on the evaluations.Our data-driven schema preserved 68% of the 63 classes from the original framework and covered 88% (73/82) of the classes proposed by evaluators. Class coverage for participants of different backgrounds ranged from 60% to 100% with a median value of 95% agreement among the individual evaluators. The schema was found understandable and structurally sound.Our proposed schema may serve as the counterpart to PICO for improving the research data needs communication between researchers and informaticians.

SUBMITTER: Hruby GW

PROVIDER: S-EPMC4873775 | biostudies-literature | 2016 Jul

REPOSITORIES: biostudies-literature

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A data-driven concept schema for defining clinical research data needs.

Hruby Gregory W GW Hoxha Julia J Ravichandran Praveen Chandar PC Mendonça Eneida A EA Hanauer David A DA Weng Chunhua C

International journal of medical informatics 20160402

<h4>Objectives</h4>The Patient, Intervention, Control/Comparison, and Outcome (PICO) framework is an effective technique for framing a clinical question. We aim to develop the counterpart of PICO to structure clinical research data needs.<h4>Methods</h4>We use a data-driven approach to abstracting key concepts representing clinical research data needs by adapting and extending an expert-derived framework originally developed for defining cancer research data needs. We annotated clinical trial el ...[more]

PMID: 27185504

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Dataset Information

A data-driven concept schema for defining clinical research data needs.

Publications

A data-driven concept schema for defining clinical research data needs.

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