Dataset Information

Tumor infiltrating lymphocytes and survival in patients with head and neck squamous cell carcinoma.

ABSTRACT: BACKGROUND:Because immune responses within the tumor microenvironment are important predictors of tumor biology, correlations of types of tumor infiltrating lymphocytes (TILs) with clinical outcomes were determined in 278 patients with head and neck squamous cell carcinoma (HNSCC). METHODS:Infiltrating levels of CD4 (helper T cells), CD8 (cytotoxic/suppressor T cells), FoxP3 (regulatory T cells), CD68 (myeloid-derived suppressor cells,) and CD1a (Langerhans) cells were measured in tissue microarrays (TMAs). Cox models tested associations with patient outcomes after adjusting for all known prognostic factors. Median follow-up was 36.6 months. RESULTS:Higher CD4 and CD8 TIL levels were associated with improved overall survival (OS; hazard ratio [HR]?=?0.77; 95% confidence interval [CI] ?=?0.65-0.93; p?=?.005 and HR?=?0.77; 95% CI?=?0.64-0.94; p?=?.008, respectively), and relapse-free survival (RFS; p?=?.03 and .05, respectively). After controlling for prognostic factors, higher CD4 levels predicted improved OS and disease-specific survival (DSS; p?=?.003 and p?=?.004, respectively). CONCLUSION:The findings suggest that TILs are a significant independent prognostic factor for HNSCC that differ by treatment. © 2016 Wiley Periodicals, Inc. Head Neck 38: 1074-1084, 2016.

SUBMITTER: Nguyen N

PROVIDER: S-EPMC4900934 | biostudies-literature | 2016 Jul

REPOSITORIES: biostudies-literature

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Tumor infiltrating lymphocytes and survival in patients with head and neck squamous cell carcinoma.

Nguyen Nghia N Bellile Emily E Thomas Daffyd D McHugh Jonathan J Rozek Laura L Virani Shama S Peterson Lisa L Carey Thomas E TE Walline Heather H Moyer Jeffery J Spector Matthew M Perim Daniel D Prince Mark M McLean Scott S Bradford Carol R CR Taylor Jeremy M G JM Wolf Gregory T GT

Head & neck 20160216 7

<h4>Background</h4>Because immune responses within the tumor microenvironment are important predictors of tumor biology, correlations of types of tumor infiltrating lymphocytes (TILs) with clinical outcomes were determined in 278 patients with head and neck squamous cell carcinoma (HNSCC).<h4>Methods</h4>Infiltrating levels of CD4 (helper T cells), CD8 (cytotoxic/suppressor T cells), FoxP3 (regulatory T cells), CD68 (myeloid-derived suppressor cells,) and CD1a (Langerhans) cells were measured in ...[more]

PMID: 26879675

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Project description:Purpose: We systematically analyzed HNSCC-infiltrating T lymphocytes lncRNAs (HILTlncRNAs) to assess their predictive value for the survival outcome and immunotherapy response of patients with anti-programmed death-1 (PD-1) therapy and to evaluate their predictive power to chemotherapeutic agents. Methods: HNSCC transcriptome and clinical information was obtained from The Cancer Genome Atlas (TCGA) database. Immunocell microarray data were obtained from the Gene Expression Omnibus (GEO) database. T-cell-specific lncRNAs were identified by differential expression analysis. Prognostic paired HILTlncRNAs (PHILTlncRNAs) were filtered and modeled by univariate cox, lasso and multivariate cox regression analysis. To construct lncRNA-miRNA-mRNA competitive endogenous RNA (ceRNA) regulatory networks, differentially expressed mRNAs in HNSCC patients were incorporated, microRNAs and differentially expressed mRNAs interacting with T-cell-specific lncRNAs were filtered out based on miRcode, miRDB, miRTarBase, and TargetScan databases. Results: 75 T-cell-specific lncRNAs and 9 prognostic PHILTlncRNAs were identified. Low-risk HNSCC patients had a better prognosis and significant immune cell infiltration, driving the immune response. Differential expression of RNA-binding proteins (RBPs), PD-1 and programmed cell death 1 ligand 1 (PD-L1) was demonstrated in the high and low risk groups of HNSCC patients. In the high risk group, high expression of PD-1 improved patient prognosis, whereas the opposite was observed in the low-risk group. The promoter methylation levels of two RBPs (DNMT1 and ZC3H12D) were decreased in HNSCC patients compared with normal samples, their expression levels were positively correlated with PD-1 and PD-L1 levels and T-cell infiltration. Finally, we screened the sensitivity of HNSCC patients to chemotherapeutic agents and found it differed between high and low risk groups. Conclusion: HILTlncRNAs provided a theoretical basis for immune targeted therapy and drug development.

Dataset Information

Tumor infiltrating lymphocytes and survival in patients with head and neck squamous cell carcinoma.

Publications

Tumor infiltrating lymphocytes and survival in patients with head and neck squamous cell carcinoma.

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