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Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader.

ABSTRACT: We determined the complete genome sequence of Sphingopyxis macrogoltabida strain 203N, a polyethylene glycol degrader. Because the PacBio assembly (285× coverage) seemed to be full of nucleotide-level mismatches, the Newbler assembly of MiSeq mate-pair and paired-end data was used for finishing and the PacBio assembly was used as a reference. The PacBio assembly carried 414 nucleotide mismatches over 5,953,153 bases of the 203N genome.

SUBMITTER: Ohtsubo Y

PROVIDER: S-EPMC4901233 | biostudies-literature | 2016 Jun

REPOSITORIES: biostudies-literature

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Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader.

Ohtsubo Yoshiyuki Y Nonoyama Shouta S Nagata Yuji Y Numata Mitsuru M Tsuchikane Keiko K Hosoyama Akira A Yamazoe Atsushi A Tsuda Masataka M Fujita Nobuyuki N Kawai Fusako F

Genome announcements 20160609 3

We determined the complete genome sequence of Sphingopyxis macrogoltabida strain 203N, a polyethylene glycol degrader. Because the PacBio assembly (285× coverage) seemed to be full of nucleotide-level mismatches, the Newbler assembly of MiSeq mate-pair and paired-end data was used for finishing and the PacBio assembly was used as a reference. The PacBio assembly carried 414 nucleotide mismatches over 5,953,153 bases of the 203N genome. ...[more]

PMID: 27284142

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