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Genome-wide patterns of selection in 230 ancient Eurasians.


ABSTRACT: Ancient DNA makes it possible to observe natural selection directly by analysing samples from populations before, during and after adaptation events. Here we report a genome-wide scan for selection using ancient DNA, capitalizing on the largest ancient DNA data set yet assembled: 230 West Eurasians who lived between 6500 and 300 bc, including 163 with newly reported data. The new samples include, to our knowledge, the first genome-wide ancient DNA from Anatolian Neolithic farmers, whose genetic material we obtained by extracting from petrous bones, and who we show were members of the population that was the source of Europe's first farmers. We also report a transect of the steppe region in Samara between 5600 and 300 bc, which allows us to identify admixture into the steppe from at least two external sources. We detect selection at loci associated with diet, pigmentation and immunity, and two independent episodes of selection on height.

SUBMITTER: Mathieson I 

PROVIDER: S-EPMC4918750 | biostudies-literature | 2015 Dec

REPOSITORIES: biostudies-literature

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Genome-wide patterns of selection in 230 ancient Eurasians.

Mathieson Iain I   Lazaridis Iosif I   Rohland Nadin N   Mallick Swapan S   Patterson Nick N   Roodenberg Songül Alpaslan SA   Harney Eadaoin E   Stewardson Kristin K   Fernandes Daniel D   Novak Mario M   Sirak Kendra K   Gamba Cristina C   Jones Eppie R ER   Llamas Bastien B   Dryomov Stanislav S   Pickrell Joseph J   Arsuaga Juan Luís JL   de Castro José María Bermúdez JM   Carbonell Eudald E   Gerritsen Fokke F   Khokhlov Aleksandr A   Kuznetsov Pavel P   Lozano Marina M   Meller Harald H   Mochalov Oleg O   Moiseyev Vyacheslav V   Guerra Manuel A Rojo MA   Roodenberg Jacob J   Vergès Josep Maria JM   Krause Johannes J   Cooper Alan A   Alt Kurt W KW   Brown Dorcas D   Anthony David D   Lalueza-Fox Carles C   Haak Wolfgang W   Pinhasi Ron R   Reich David D  

Nature 20151123 7583


Ancient DNA makes it possible to observe natural selection directly by analysing samples from populations before, during and after adaptation events. Here we report a genome-wide scan for selection using ancient DNA, capitalizing on the largest ancient DNA data set yet assembled: 230 West Eurasians who lived between 6500 and 300 bc, including 163 with newly reported data. The new samples include, to our knowledge, the first genome-wide ancient DNA from Anatolian Neolithic farmers, whose genetic  ...[more]

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