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FRED 2: an immunoinformatics framework for Python.


ABSTRACT: Immunoinformatics approaches are widely used in a variety of applications from basic immunological to applied biomedical research. Complex data integration is inevitable in immunological research and usually requires comprehensive pipelines including multiple tools and data sources. Non-standard input and output formats of immunoinformatics tools make the development of such applications difficult. Here we present FRED 2, an open-source immunoinformatics framework offering easy and unified access to methods for epitope prediction and other immunoinformatics applications. FRED 2 is implemented in Python and designed to be extendable and flexible to allow rapid prototyping of complex applications.FRED 2 is available at http://fred-2.github.ioschubert@informatik.uni-tuebingen.deSupplementary data are available at Bioinformatics online.

SUBMITTER: Schubert B 

PROVIDER: S-EPMC4920123 | biostudies-literature | 2016 Jul

REPOSITORIES: biostudies-literature

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FRED 2: an immunoinformatics framework for Python.

Schubert Benjamin B   Walzer Mathias M   Brachvogel Hans-Philipp HP   Szolek András A   Mohr Christopher C   Kohlbacher Oliver O  

Bioinformatics (Oxford, England) 20160226 13


<h4>Unlabelled</h4>Immunoinformatics approaches are widely used in a variety of applications from basic immunological to applied biomedical research. Complex data integration is inevitable in immunological research and usually requires comprehensive pipelines including multiple tools and data sources. Non-standard input and output formats of immunoinformatics tools make the development of such applications difficult. Here we present FRED 2, an open-source immunoinformatics framework offering eas  ...[more]

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