Dataset Information

Phylogeography and population genetics of Schizothorax o'connori: strong subdivision in the Yarlung Tsangpo River inferred from mtDNA and microsatellite markers.

ABSTRACT: The Qinghai-Tibet Plateau (QTP) is a biodiversity hotspot, resulting from its geological history, contemporary environment and isolation. Uplift of the QTP and Quaternary climatic oscillations are hypothesised to have influenced the genetic diversity, population structure and dynamics of all QTP endemic species. In this study, we tested this hypothesis by assaying variation at two mitochondrial DNA regions (cytochrome b and control region) and at 12 microsatellite loci of seven populations of the endemic fish, Schizothorax o'connori from the Yarlung Tsangpo River (YLTR) on the QTP. Analyses revealed one group of six populations to the west, above the Yarlung Tsangpo Grand Canyon (YTGC), and a second group to the east below the YTGC. Estimates of the timing of this east-west split indicate that these groups represent evolutionarily significant units that have evolved separately and rapidly in the middle Pleistocene, at the time of the Kunlun-Huanghe Movement A Phase and the Naynayxungla glaciation. Population dynamic analyses indicate that S. o'connori experienced a pronounced late Pleistocene expansion during the last interglacial period. The results of this study support the hypotheses that the QTP uplift and Quaternary climatic oscillations have played important roles in shaping the population genetics and dynamics of this endemic fish.

SUBMITTER: Guo XZ

PROVIDER: S-EPMC4947931 | biostudies-literature | 2016 Jul

REPOSITORIES: biostudies-literature

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Publications

Phylogeography and population genetics of Schizothorax o'connori: strong subdivision in the Yarlung Tsangpo River inferred from mtDNA and microsatellite markers.

Guo Xiang-Zhao XZ Zhang Gui-Rong GR Wei Kai-Jian KJ Yan Ruo-Jin RJ Ji Wei W Yang Rui-Bin RB Wei Qi-Wei QW Gardner Jonathan P A JP

Scientific reports 20160718

The Qinghai-Tibet Plateau (QTP) is a biodiversity hotspot, resulting from its geological history, contemporary environment and isolation. Uplift of the QTP and Quaternary climatic oscillations are hypothesised to have influenced the genetic diversity, population structure and dynamics of all QTP endemic species. In this study, we tested this hypothesis by assaying variation at two mitochondrial DNA regions (cytochrome b and control region) and at 12 microsatellite loci of seven populations of th ...[more]

PMID: 27425185

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Project description:The distinct Tibetan regional diet is strongly influenced by the regional biogeography, indigenous traditions, popular religious beliefs and food taboos. In the context of the nutritional transition in Tibet, studies seldom report on the food consumption and dietary patterns of Tibetan residents. This is a cross-section study of 552 local adults (≥18 years old, 277 men and 275 women) living in 14 agricultural countries along the Yarlung Tsangpo River. Dietary intakes were assessed by a culturally specific FFQ and compared with the Chinese Dietary Pagoda (2016). Dietary Patterns were extracted by using PCA method. The binary logistic regression model was applied to assess the association between independent variables (genders, regions and age groups) and adherence to dietary patterns. With the exception of meat (100 ± 260 g/day) and soybean nuts (42 ± 12 g/day), which exceeded the recommended dietary intakes of CDP, the dietary intake of other foods were not up to the recommended value. In particular, the intake of aquatic products (2 ± 0.1 g/day), vegetables (90 ± 19 g/day), dairy products (114 ± 29 g/day), cereals (117 ± 27 g/day) and fruits (97 ± 25 g/day) were seriously inadequate, which were 95%, 70%, 62%, 53.2% and 51.5% lower than the recommended intakes, respectively. Four dietary patterns were identified. "Local traditional diet" was characterized by a high intake of tsampa (roasted highland barley flour), culturally specific beverages (sweet tea and yak buttered tea), potato and yak beef and was associated with female, rural and older adults (≥51 years old). The male, urban and 18~30 years old group had a higher adherence score with the "Han diet", which was comprised of rice, pork, dumplings, eggs, milk and cabbage. The "Beverage diet", which mainly include tsampa, chang (homemade barley wine) and sweet tea, was associated with the following group: female, urban and aged 18~30 years. The "Out-sourced diet" pattern, consisting of mainly rice, steam bread and some processed meat, was associated with being male, urban and 18-30 years of age. These findings indicate that the dietary practice of the Tibetan people still has strong local characteristics, but it is also undergoing a dietary transition with the penetration of the Chinese Han diet and the increased consumption of outsourced (processed) foods. The unbalanced dietary intake of Tibetan residents should be taken seriously by all parties.

Dataset Information

Phylogeography and population genetics of Schizothorax o'connori: strong subdivision in the Yarlung Tsangpo River inferred from mtDNA and microsatellite markers.

Publications

Phylogeography and population genetics of Schizothorax o'connori: strong subdivision in the Yarlung Tsangpo River inferred from mtDNA and microsatellite markers.

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