Ontology highlight
ABSTRACT:
SUBMITTER: Johnson MG
PROVIDER: S-EPMC4948903 | biostudies-literature | 2016 Jul
REPOSITORIES: biostudies-literature
Johnson Matthew G MG Gardner Elliot M EM Liu Yang Y Medina Rafael R Goffinet Bernard B Shaw A Jonathan AJ Zerega Nyree J C NJ Wickett Norman J NJ
Applications in plant sciences 20160712 7
<h4>Premise of the study</h4>Using sequence data generated via target enrichment for phylogenetics requires reassembly of high-throughput sequence reads into loci, presenting a number of bioinformatics challenges. We developed HybPiper as a user-friendly platform for assembly of gene regions, extraction of exon and intron sequences, and identification of paralogous gene copies. We test HybPiper using baits designed to target 333 phylogenetic markers and 125 genes of functional significance in Ar ...[more]