DNATCO: assignment of DNA conformers at dnatco.org.
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ABSTRACT:
SUBMITTER: Cerny J
PROVIDER: S-EPMC4987927 | biostudies-literature | 2016 Jul
REPOSITORIES: biostudies-literature
Publications
DNATCO: assignment of DNA conformers at dnatco.org.
Černý Jiří J Božíková Paulína P Schneider Bohdan B
Nucleic acids research 20160505 W1
The web service DNATCO (dnatco.org) classifies local conformations of DNA molecules beyond their traditional sorting to A, B and Z DNA forms. DNATCO provides an interface to robust algorithms assigning conformation classes called NTC: to dinucleotides extracted from DNA-containing structures uploaded in PDB format version 3.1 or above. The assigned dinucleotide NTC: classes are further grouped into DNA structural alphabet NTA: , to the best of our knowledge the first DNA structural alphabet. The ...[more]
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