Dataset Information

Development and molecular characterization of a doubled haploid population derived from a hybrid between japonica rice and wide compatible indica rice.

ABSTRACT: Doubled haploid (DH) populations, particularly those from subspecies crosses possessing the wide compatible gene S5ⁿ , are important germplasm resources for rice genetic studies and breeding, but their feature and potential have not been fully assessed and explored. In the present study, we produced a DH population from the hybrid of japonica 668B and wide compatible indica T23. Genotyping of the S5 locus with allele-specific markers for ORF3, ORF4 and ORF5 revealed a potential recombination hot spot in the ORF3-ORF4 region. Haplotyping analysis revealed that 21/34 subspecies specific Indel markers segregated in distortion in the DH population, with a few lines having indica alleles either extremely low (1.7%) or high (98.3%), with little effect of the S5 allele. While DH lines with the S5ⁿ allele had higher frequency of indica alleles, no effect of the S5ⁿ allele was observed on all agronomic traits but flowering time. Taken together, the present study advanced understanding of the genetics of wide crosses in general, and DH production in particular between the two rice subspecies, and the new DH population generated will become a useful resource for rice genetic study and breeding in the future.

SUBMITTER: Nguyen H

PROVIDER: S-EPMC5010298 | biostudies-literature | 2016 Sep

REPOSITORIES: biostudies-literature

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Development and molecular characterization of a doubled haploid population derived from a hybrid between japonica rice and wide compatible indica rice.

Nguyen Hung H Chen Xiao-Yang XY Jiang Meng M Wang Qing Q Deng Li L Zhang Wei-Zhang WZ Shu Qing-Yao QY

Breeding science 20160622 4

Doubled haploid (DH) populations, particularly those from subspecies crosses possessing the wide compatible gene S5n , are important germplasm resources for rice genetic studies and breeding, but their feature and potential have not been fully assessed and explored. In the present study, we produced a DH population from the hybrid of japonica 668B and wide compatible indica T23. Genotyping of the S5 locus with allele-specific markers for ORF3, ...[more]

PMID: 27795680

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Project description:Determination of the optimal fertilization method is crucial to maximize nitrogen use efficiency and yield of different rice cultivars. Side-deep fertilization with controlled-release nitrogen, in conjunction with machine transplanting and subsequent topdressing, was applied to Indica-japonica hybrid rice 'Yongyou1540' (YY1540) and indica hybrid rice 'Tianyouhuazhan' (TYHZ). Four nitrogen treatments were applied in 2018 and 2019: traditional nitrogen application with quick-release nitrogen (T1), single-dose deep fertilization at transplanting with 100% controlled-release nitrogen (T2), and deep fertilization of 70% controlled-release nitrogen and topdressing of 30% quick nitrogen at tillering (T3), or at panicle initiation (T4). Side-deep fertilization reduced the fertilizer application frequency without causing yield loss, T4 enhanced the yield of YY1540 by increasing the number of productive tillers and number of spikelets per panicle compared with T1, T2 and T3. The yield of TYHZ showed no significant difference among treatments. The T4 treatment decreased the number of tillers at the tilling peak stage and increased the percentage productive tillers and number of differentiated spikelets. Compared with the other treatments, T4 increased dry matter accumulation and leaf area index during panicle initiation and grain ripening, and contributed to enhanced nitrogen uptake and nitrogen utilization in YY1540. On average, nitrogen uptake and utilization in YY1540 were highest in T4, but no significant differences among treatments were observed in TYHZ. Dry matter accumulation and nitrogen uptake from panicle initiation to heading of YY1540 were correlated with number of spikelets per panicle, but no significant correlations were observed for TYHZ. Supplementary topdressing with quick-release nitrogen at the panicle initiation stage was required to increase yield of indica-japonica hybrid rice, whereas single-dose deep fertilization with controlled-release nitrogen is satisfactory for the indica hybrid cultivar.

Dataset Information

Development and molecular characterization of a doubled haploid population derived from a hybrid between japonica rice and wide compatible indica rice.

Publications

Development and molecular characterization of a doubled haploid population derived from a hybrid between <i>japonica</i> rice and wide compatible <i>indica</i> rice.

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