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A modified ant colony optimization algorithm for tumor marker gene selection.

ABSTRACT: Microarray data are often extremely asymmetric in dimensionality, such as thousands or even tens of thousands of genes but only a few hundreds of samples or less. Such extreme asymmetry between the dimensionality of genes and samples can lead to inaccurate diagnosis of disease in clinic. Therefore, it has been shown that selecting a small set of marker genes can lead to improved classification accuracy. In this paper, a simple modified ant colony optimization (ACO) algorithm is proposed to select tumor-related marker genes, and support vector machine (SVM) is used as classifier to evaluate the performance of the extracted gene subset. Experimental results on several benchmark tumor microarray datasets showed that the proposed approach produces better recognition with fewer marker genes than many other methods. It has been demonstrated that the modified ACO is a useful tool for selecting marker genes and mining high dimension data.

SUBMITTER: Yu H

PROVIDER: S-EPMC5054414 | biostudies-literature | 2009 Dec

REPOSITORIES: biostudies-literature

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A modified ant colony optimization algorithm for tumor marker gene selection.

Yu Hualong H Gu Guochang G Liu Haibo H Shen Jing J Zhao Jing J

Genomics, proteomics & bioinformatics 20091201 4

Microarray data are often extremely asymmetric in dimensionality, such as thousands or even tens of thousands of genes but only a few hundreds of samples or less. Such extreme asymmetry between the dimensionality of genes and samples can lead to inaccurate diagnosis of disease in clinic. Therefore, it has been shown that selecting a small set of marker genes can lead to improved classification accuracy. In this paper, a simple modified ant colony optimization (ACO) algorithm is proposed to selec ...[more]

PMID: 20172493

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