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Rare Variants in PLD3 Do Not Affect Risk for Early-Onset Alzheimer Disease in a European Consortium Cohort.


ABSTRACT: Rare variants in the phospholipase D3 gene (PLD3) were associated with increased risk for late-onset Alzheimer disease (LOAD). We identified a missense mutation in PLD3 in whole-genome sequence data of a patient with autopsy confirmed Alzheimer disease (AD) and onset age of 50 years. Subsequently, we sequenced PLD3 in a Belgian early-onset Alzheimer disease (EOAD) patient (N = 261) and control (N = 319) cohort, as well as in European EOAD patients (N = 946) and control individuals (N = 1,209) ascertained in different European countries. Overall, we identified 22 rare variants with a minor allele frequency <1%, 20 missense and two splicing mutations. Burden analysis did not provide significant evidence for an enrichment of rare PLD3 variants in EOAD patients in any of the patient/control cohorts. Also, meta-analysis of the PLD3 data, including a published dataset of a German EOAD cohort, was not significant (P = 0.43; OR = 1.53, 95% CI 0.60-3.31). Consequently, our data do not support a role for PLD3 rare variants in the genetic etiology of EOAD in European EOAD patients. Our data corroborate the negative replication data obtained in LOAD studies and therefore a genetic role of PLD3 in AD remains to be demonstrated.

SUBMITTER: Cacace R 

PROVIDER: S-EPMC5057316 | biostudies-literature | 2015 Dec

REPOSITORIES: biostudies-literature

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Rare Variants in PLD3 Do Not Affect Risk for Early-Onset Alzheimer Disease in a European Consortium Cohort.

Cacace Rita R   Van den Bossche Tobi T   Engelborghs Sebastiaan S   Geerts Nathalie N   Laureys Annelies A   Dillen Lubina L   Graff Caroline C   Thonberg Håkan H   Chiang Huei-Hsin HH   Pastor Pau P   Ortega-Cubero Sara S   Pastor Maria A MA   Diehl-Schmid Janine J   Alexopoulos Panagiotis P   Benussi Luisa L   Ghidoni Roberta R   Binetti Giuliano G   Nacmias Benedetta B   Sorbi Sandro S   Sanchez-Valle Raquel R   Lladó Albert A   Gelpi Ellen E   Almeida Maria Rosário MR   Santana Isabel I   Tsolaki Magda M   Koutroumani Maria M   Clarimon Jordi J   Lleó Alberto A   Fortea Juan J   de Mendonça Alexandre A   Martins Madalena M   Borroni Barbara B   Padovani Alessandro A   Matej Radoslav R   Rohan Zdenek Z   Vandenbulcke Mathieu M   Vandenberghe Rik R   De Deyn Peter P PP   Cras Patrick P   van der Zee Julie J   Sleegers Kristel K   Van Broeckhoven Christine C  

Human mutation 20151014 12


Rare variants in the phospholipase D3 gene (PLD3) were associated with increased risk for late-onset Alzheimer disease (LOAD). We identified a missense mutation in PLD3 in whole-genome sequence data of a patient with autopsy confirmed Alzheimer disease (AD) and onset age of 50 years. Subsequently, we sequenced PLD3 in a Belgian early-onset Alzheimer disease (EOAD) patient (N = 261) and control (N = 319) cohort, as well as in European EOAD patients (N = 946) and control individuals (N = 1,209) as  ...[more]

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