Browse
Submit Data
Databases
API
Help

Dataset Information

27 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Draft Genome Sequence of Three Endophyte Strains of Pseudomonas fluorescens Isolated from Miscanthus giganteus.

ABSTRACT: We report here the draft genome sequence of three Pseudomonas fluorescens strains (L111, L228, and L321) isolated from Miscanthus giganteus The draft genome analyses uncovered a group of genes involved in the biosynthesis of secondary metabolites and for plant growth promotion.

SUBMITTER: Moreira AS

PROVIDER: S-EPMC5064097 | biostudies-literature | 2016 Oct

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Draft Genome Sequence of Three Endophyte Strains of Pseudomonas fluorescens Isolated from Miscanthus giganteus.

Moreira António S AS Germaine Kieran J KJ Lloyd Andrew A Lally Richard D RD Galbally Paul T PT Ryan David D Dowling David N DN

Genome announcements 20161013 5

We report here the draft genome sequence of three Pseudomonas fluorescens strains (L111, L228, and L321) isolated from Miscanthus giganteus The draft genome analyses uncovered a group of genes involved in the biosynthesis of secondary metabolites and for plant growth promotion. ...[more]

PMID: 27738024

Similar Datasets

Draft Genome Sequences of Three Pseudomonas fluorescens Strains Isolated from Marine Sponges Harvested off the West Coast of Ireland.

Project description:Three Pseudomonas sp. strains isolated from marine sponges have shown potential quorum sensing inhibition (QSI) activity. We sequenced the draft genomes of the three strains with the goal of determining which genes or gene cluster(s) could be potentially involved in the QSI activity. Average nucleotide identity (ANI) and phylogenetic analysis classified the three strains as belonging to the Pseudomonas fluorescens species.

| S-EPMC7242681 | biostudies-literature

Draft Genome Sequence of Pseudomonas fluorescens Strain ET76, Isolated from Rice Rhizosphere in Northwestern Morocco.

Project description:Pseudomonas fluorescens ET76 was isolated from rice rhizosphere in northwestern Morocco. Its draft genome was estimated to be 6,681,652 bp with 5,789 coding sequences (CDSs). Genes encoding for type I to VI secretion systems, PvdQ, proteases, siderophores, hydrogen cyanide synthase, ACC-deaminase, among others, highlight its potential use in biological control of plant pathogens.

| S-EPMC4889006 | biostudies-literature

Improved High-Quality Draft Genome Sequence of Pseudomonas fluorescens KENGFT3.

Project description:Pseudomonas sp. strain KENGFT3 inhibits the growth of Phytophthora infestans and is a potentially useful biopesticide for plant diseases, including potato late blight. We sequenced the 6.2-Mbp genome of this strain and assembled it into a single scaffold with 9 contigs. KENGFT3 is related to previously sequenced strains of P. fluorescens.

| S-EPMC4882946 | biostudies-literature

Draft genome sequences of the Pseudomonas fluorescens biocontrol strains Wayne1R and Wood1R.

Project description:Pseudomonas fluorescens strains Wayne1R and Wood1R have proven capacities to improve plant health. Here we report the draft genome sequences and automatic annotations of both strains. Genome comparisons reveal similarities with P. fluorescens strain Pf-5, reveal the novelty of Wood1R, and indicate some genes that may be related to biocontrol.

| S-EPMC3264083 | biostudies-other

Draft Genome Sequences of Three Pseudomonas chengduensis Strains Isolated from Desert Soil in Morocco.

Project description:We report the draft genome sequences of three Pseudomonas chengduensis strains isolated from the sand dunes of the Merzouga (MDMC17 strain) and Erg Lihoudi (MDMC216 and MDMC224 strains) regions in the Moroccan desert. These bacteria are able to tolerate the harsh environmental conditions of the desert ecosystem.

| S-EPMC9933653 | biostudies-literature

Draft Genome Sequence of the Industrially Significant Bacterium Pseudomonas fluorescens ATCC 13525.

Project description:Pseudomonas fluorescens is a Gram-negative bacterium with versatile metabolic functions and potential industrial uses. We sequenced P. fluorescens strain ATCC 13525 with the goal of determining virulence factors and antibiotic resistance genes to predict the potential impacts on human and environmental health in the event of exposure.

| S-EPMC6256488 | biostudies-literature

Draft Genome Sequence of the Phenazine-Producing Pseudomonas fluorescens Strain 2-79.

Project description:Pseudomonas fluorescens strain 2-79, a natural isolate of the rhizosphere of wheat (Triticum aestivum L.), possesses antagonistic potential toward several fungal pathogens. We report the draft genome sequence of strain 2-79, which comprises 5,674 protein-coding sequences.

| S-EPMC4384134 | biostudies-literature

Draft Genome Sequence of the Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens Strain CREA-C16 Isolated from Pea (Pisum sativum L.) Rhizosphere.

Project description:Herein, we report the draft genome sequence of Pseudomonas fluorescens strain CREA-C16, a plant growth-promoting rhizobacterium that was isolated from the rhizosphere of Pisum sativum L. plants. The genome sequence is ~6 Mb in size, with a G+C content of 60.1%, and includes 4,457 candidate protein-encoding genes.

| S-EPMC5270692 | biostudies-literature

Draft Genome Sequence of Streptomyces sp. XY006, an Endophyte Isolated from Tea (Camellia sinensis).

Project description:Streptomyces sp. XY006 is an endophytic bacterium isolated from the young leaf material of the tea plant (Camellia sinensis). The draft genome consists of 8.2 Mb and encodes 7,415 putative open reading frames. This strain is found to contain a high capacity for the production of natural products.

| S-EPMC5597763 | biostudies-literature

Plant tissue characteristics of Miscanthus x giganteus

Project description:As part of a study identifying relationships between environmental variables and insect distributions within a bioenergy crop, giant miscanthus (Miscanthus x giganteus) samples were collected in October 2016 at 33 locations within a field in southeast Georgia, USA. At each location, one plant sample was collected every 3 to 4 m along a 15 m transect, resulting in 5 replicates per sampling location. The plant samples were separated into leaves and stems, dried, and ground. The chemical composition of the ground material was assessed by measuring total carbon and nitrogen, total macro- and micronutrients (aluminum, arsenic, boron, calcium, cadmium, cobalt, chromium, copper, iron, potassium, magnesium, manganese, molybdenum, sodium, nickel, phosphorus, lead, sulfur, selenium, silicon, titanium, vanadium, and zinc) using Inductively Coupled Plasma with Optical Emission Spectroscopy (ICP-OES), and optical characteristics of the water extractable organic matter (WEOM) using UV-Visible and Fluorescence Excitation Emission Matrix (EEM) spectroscopy. This dataset will be useful to identify relationships between the chemical composition of giant miscanthus tissues and pest distributions within a bioenergy crop field. Measurement(s)plant tissue chemical compositionTechnology Type(s)inductively coupled plasma with optical emisison spectroscopy • UV-Visible and fluorescence spectroscopySample Characteristic - OrganismMiscanthus x giganteusSample Characteristic - Environmentbioenergy crop fieldSample Characteristic - LocationUnited States

| S-EPMC9200790 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data