Unknown

Dataset Information

0

The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography.


ABSTRACT: Phytochromes are a family of photoreceptors that control light responses of plants, fungi and bacteria. A sequence of structural changes, which is not yet fully understood, leads to activation of an output domain. Time-resolved serial femtosecond crystallography (SFX) can potentially shine light on these conformational changes. Here we report the room temperature crystal structure of the chromophore-binding domains of the Deinococcus radiodurans phytochrome at 2.1?Å resolution. The structure was obtained by serial femtosecond X-ray crystallography from microcrystals at an X-ray free electron laser. We find overall good agreement compared to a crystal structure at 1.35?Å resolution derived from conventional crystallography at cryogenic temperatures, which we also report here. The thioether linkage between chromophore and protein is subject to positional ambiguity at the synchrotron, but is fully resolved with SFX. The study paves the way for time-resolved structural investigations of the phytochrome photocycle with time-resolved SFX.

SUBMITTER: Edlund P 

PROVIDER: S-EPMC5069500 | biostudies-literature | 2016 Oct

REPOSITORIES: biostudies-literature

altmetric image

Publications

The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography.

Edlund Petra P   Takala Heikki H   Claesson Elin E   Henry Léocadie L   Dods Robert R   Lehtivuori Heli H   Panman Matthijs M   Pande Kanupriya K   White Thomas T   Nakane Takanori T   Berntsson Oskar O   Gustavsson Emil E   Båth Petra P   Modi Vaibhav V   Roy-Chowdhury Shatabdi S   Zook James J   Berntsen Peter P   Pandey Suraj S   Poudyal Ishwor I   Tenboer Jason J   Kupitz Christopher C   Barty Anton A   Fromme Petra P   Koralek Jake D JD   Tanaka Tomoyuki T   Spence John J   Liang Mengning M   Hunter Mark S MS   Boutet Sebastien S   Nango Eriko E   Moffat Keith K   Groenhof Gerrit G   Ihalainen Janne J   Stojković Emina A EA   Schmidt Marius M   Westenhoff Sebastian S  

Scientific reports 20161019


Phytochromes are a family of photoreceptors that control light responses of plants, fungi and bacteria. A sequence of structural changes, which is not yet fully understood, leads to activation of an output domain. Time-resolved serial femtosecond crystallography (SFX) can potentially shine light on these conformational changes. Here we report the room temperature crystal structure of the chromophore-binding domains of the Deinococcus radiodurans phytochrome at 2.1 Å resolution. The structure was  ...[more]

Similar Datasets

| S-EPMC5544322 | biostudies-literature
| S-EPMC5495810 | biostudies-literature
| S-EPMC4711625 | biostudies-literature
| S-EPMC3905732 | biostudies-literature
| S-EPMC6830213 | biostudies-literature
| S-EPMC5599499 | biostudies-literature
| S-EPMC6400179 | biostudies-literature
| S-EPMC9344480 | biostudies-literature
| S-EPMC4107920 | biostudies-literature
| S-EPMC8930625 | biostudies-literature