MdRNA-Seq analysis of marine microbial communities from the northern Red Sea.
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ABSTRACT:
SUBMITTER: Hou S
PROVIDER: S-EPMC5069720 | biostudies-literature | 2016 Oct
REPOSITORIES: biostudies-literature
Publications
mdRNA-Seq analysis of marine microbial communities from the northern Red Sea.
Hou Shengwei S Pfreundt Ulrike U Miller Dan D Berman-Frank Ilana I Hess Wolfgang R WR
Scientific reports 20161019
Metatranscriptomic differential RNA-Seq (mdRNA-Seq) identifies the suite of active transcriptional start sites at single-nucleotide resolution through enrichment of primary transcript 5' ends. Here we analyzed the microbial community at 45 m depth at Station A in the northern Gulf of Aqaba, Red Sea, during 500 m deep mixing in February 2012 using mdRNA-Seq and a parallel classical RNA-Seq approach. We identified promoters active in situ for five different pico-planktonic genera (the SAR11 clade ...[more]
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