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ABSTRACT: Availability and implementation
MetaCycle package is available on the CRAN repository (https://cran.r-project.org/web/packages/MetaCycle/index.html) and GitHub (https://github.com/gangwug/MetaCycle).Contact
hogenesch@gmail.comSupplementary information: Supplementary data are available at Bioinformatics online.
SUBMITTER: Wu G
PROVIDER: S-EPMC5079475 | biostudies-literature | 2016 Nov
REPOSITORIES: biostudies-literature
Wu Gang G Anafi Ron C RC Hughes Michael E ME Kornacker Karl K Hogenesch John B JB
Bioinformatics (Oxford, England) 20160704 21
Detecting periodicity in large scale data remains a challenge. While efforts have been made to identify best of breed algorithms, relatively little research has gone into integrating these methods in a generalizable method. Here, we present MetaCycle, an R package that incorporates ARSER, JTK_CYCLE and Lomb-Scargle to conveniently evaluate periodicity in time-series data. MetaCycle has two functions, meta2d and meta3d, designed to analyze two-dimensional and three-dimensional time-series dataset ...[more]