Dataset Information

Interaction between Penaeid Shrimp and Fish Populations in the Gulf of Mexico: Importance of Shrimp as Forage Species.

ABSTRACT: This study investigated the contribution of shrimp stocks in supporting the production of valuable predator species. Fishery-independent data on white shrimp, brown shrimp, and selected fish species (spotted seatrout, red drum, and southern flounder) were collected from 1986 to 2014 by the Texas Parks and Wildlife Department, and converted to catch-per-unit effort (CPUE). Here, the associations between the CPUEs of fish species as predators and those of shrimp species as prey in each sampled bay and sampling season were analyzed using co-integration analysis and Partial Least Squares Regression (PLSR). Co-integration analysis revealed significant associations between 31 of 70 possible fish/shrimp pairings. The analysis also revealed discernible seasonal and spatial patterns. White shrimp in August and brown shrimp in May were associated with fish CPUEs in bays located along the lower coast of Texas, whereas white shrimp in November was more strongly associated with fish CPUEs in bays located on the upper coast. This suggests the possible influence of latitudinal environmental gradient. The results of the PLSR, on the other hand, were not conclusive. This may reflect the high statistical error rates inherent to the analysis of short non-stationary time series. Co-integration is a robust method when analyzing non-stationary time series, and a majority of time series in this study was non-stationary. Based on our co-integration results, we conclude that the CPUE data show significant associations between shrimp abundance and the three predator fish species in the tested regions.

SUBMITTER: Fujiwara M

PROVIDER: S-EPMC5104333 | biostudies-literature | 2016

REPOSITORIES: biostudies-literature

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Interaction between Penaeid Shrimp and Fish Populations in the Gulf of Mexico: Importance of Shrimp as Forage Species.

Fujiwara Masami M Zhou Can C Acres Chelsea C Martinez-Andrade Fernando F

PloS one 20161110 11

This study investigated the contribution of shrimp stocks in supporting the production of valuable predator species. Fishery-independent data on white shrimp, brown shrimp, and selected fish species (spotted seatrout, red drum, and southern flounder) were collected from 1986 to 2014 by the Texas Parks and Wildlife Department, and converted to catch-per-unit effort (CPUE). Here, the associations between the CPUEs of fish species as predators and those of shrimp species as prey in each sampled bay ...[more]

PMID: 27832213

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Project description:We sampled Thaumarchaeota populations in the northern Gulf of Mexico, including shelf waters under the Mississippi River outflow plume that are subject to recurrent hypoxia. Data from this study allowed us to: (1) test the hypothesis that Thaumarchaeota would be abundant in this region; (2) assess phylogenetic composition of these populations for comparison with other regions; (3) compare the efficacy of quantitative PCR (qPCR) based on primers for 16S rRNA genes (rrs) with primers for genes in the ammonia oxidation (amoA) and carbon fixation (accA, hcd) pathways; (4) compare distributions obtained by qPCR with the relative abundance of Thaumarchaeota rrs in pyrosequenced libraries; (5) compare Thaumarchaeota distributions with environmental variables to help us elucidate the factors responsible for the distributions; (6) compare the distribution of Thaumarchaeota with Nitrite-Oxidizing Bacteria (NOB) to gain insight into the coupling between ammonia and nitrite oxidation. We found up to 10(8)?copies?L(-1) of Thaumarchaeota rrs in our samples (up to 40% of prokaryotes) by qPCR, with maximum abundance in slope waters at 200-800?m. Thaumarchaeota rrs were also abundant in pyrosequenced libraries and their relative abundance correlated well with values determined by qPCR (r (2)?=?0.82). Thaumarchaeota populations were strongly stratified by depth. Canonical correspondence analysis using a suite of environmental variables explained 92% of the variance in qPCR-estimated gene abundances. Thaumarchaeota rrs abundance was correlated with salinity and depth, while accA abundance correlated with fluorescence and pH. Correlations of Archaeal amoA abundance with environmental variables were primer-dependent, suggesting differential responses of sub-populations to environmental variables. Bacterial amoA was at the limit of qPCR detection in most samples. NOB and Euryarchaeota rrs were found in the pyrosequenced libraries; NOB distribution was correlated with that of Thaumarchaeota (r (2)?=?0.49).

Dataset Information

Interaction between Penaeid Shrimp and Fish Populations in the Gulf of Mexico: Importance of Shrimp as Forage Species.

Publications

Interaction between Penaeid Shrimp and Fish Populations in the Gulf of Mexico: Importance of Shrimp as Forage Species.

Similar Datasets

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