Browse
Submit Data
Databases
API
Help

Dataset Information

30 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Pediococcus pentosaceus Strain wikim 20, Isolated from Korean Kimchi.

ABSTRACT: Pediococcus pentosaceus strain wikim 20 is a lactic acid bacterium that was isolated from kimchi, a representative traditional Korean fermented food. Here, we announce the complete genome sequence of P. pentosaceus strain wikim 20 consisting of a 1,830,629-bp chromosome and provide a description of its annotation.

SUBMITTER: Lee SH

PROVIDER: S-EPMC5105092 | biostudies-literature | 2016 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of Pediococcus pentosaceus Strain wikim 20, Isolated from Korean Kimchi.

Lee Se Hee SH Jung Min Young MY Park Boyeon B Sung-Oh Sohn S Park Hae Woong HW Choi Hak-Jong HJ Lee Jong-Hee JH

Genome announcements 20161110 6

Pediococcus pentosaceus strain wikim 20 is a lactic acid bacterium that was isolated from kimchi, a representative traditional Korean fermented food. Here, we announce the complete genome sequence of P. pentosaceus strain wikim 20 consisting of a 1,830,629-bp chromosome and provide a description of its annotation. ...[more]

PMID: 27834699

Similar Datasets

Complete Genome Sequence of Pediococcus pentosaceus Strain SL4.

Project description:Pediococcus pentosaceus SL4 was isolated from a Korean fermented vegetable product, kimchi. We report here the whole-genome sequence (WGS) of P. pentosaceus SL4. The genome consists of a 1.79-Mb circular chromosome (G+C content of 37.3%) and seven distinct plasmids ranging in size from 4 kb to 50 kb.

| S-EPMC3873615 | biostudies-literature

Complete Genome Sequence of Pediococcus pentosaceus Strain GDIAS 001.

Project description:Pediococcus pentosaceus strain GDIAS 001 was isolated from a tapioca sample in Guangzou, China. The genome of GDIAS 001 was assembled using single-molecule real-time (SMRT) sequencing, and it contains 1 chromosome of 1.83 Mbp and 1,835 protein-coding genes, 71 RNA genes, and 56 tRNA genes.

| S-EPMC7082465 | biostudies-literature

Complete Genome Sequence of Weissella cibaria Strain BM2, Isolated from Korean Kimchi.

Project description:Weissella cibaria appears to have broad-spectrum health benefits. Here, we report the genome sequence of Weissella cibaria strain BM2, which was isolated from homemade kimchi; it consists of one circular chromosome of 2,462,443 bp and one plasmid of 11,067 bp. A total of 2,337 coding sequences were predicted, including 2,117 protein-coding sequences and a G+C content of 45.06%.

| S-EPMC7441229 | biostudies-literature

Genome sequence of Pediococcus pentosaceus strain IE-3.

Project description:We report the 1.8-Mb genome sequence of Pediococcus pentosaceus strain IE-3, isolated from a dairy effluent sample. The whole-genome sequence of this strain will aid in comparative genomics of Pediococcus pentosaceus strains of diverse ecological origins and their biotechnological applications.

| S-EPMC3416253 | biostudies-literature

Complete Genome Sequence of Klebsiella sp. CTHL.F3a, a Cellulolytic Strain Isolated from Korean Kimchi.

Project description:The cellulolytic strain Klebsiella sp. CTHL.F3a was isolated from kimchi (Korean fermented cabbage/vegetables). Its complete genome sequence (6,146,223 bp, GC content of 55.21%), comprising a chromosome and a single plasmid, was established through hybrid assembly.

| S-EPMC9387283 | biostudies-literature

Complete genome sequence of Leuconostoc gelidum strain JB7, isolated from kimchi.

Project description:A strain of Leuconostoc gelidum, designated strain JB7, was isolated from kimchi, the representative Korean traditional fermented food. Here we announce the complete genome sequence of L. gelidum strain JB7, consisting of a 1,893,499-bp circular chromosome with a G+C content of 36.68%, and provide a description of its annotation.

| S-EPMC3497507 | biostudies-literature

Complete genome sequence of Leuconostoc carnosum strain JB16, isolated from kimchi.

Project description:Leuconostoc carnosum strain JB16 was isolated from kimchi, the traditional Korean fermented food. Here, we report the complete genome sequence of L. carnosum strain JB16, consisting of a 1,645,096-bp circular chromosome with a G+C content of 37.24% and four plasmids.

| S-EPMC3497485 | biostudies-literature

Complete Genome Sequence of Lactobacillus curvatus Strain WiKim38 Isolated from Kimchi.

Project description:Lactobacillus curvatus WiKim38 is a potential probiotic strain isolated from kimchi, a traditional Korean fermented food. The complete genome of the WiKim38 strain consisted of a circular chromosome of 1,940,170 bp in length with a G+C content of 41.93%.

| S-EPMC5477189 | biostudies-literature

Complete genome sequence of Leuconostoc kimchii strain C2, isolated from Kimchi.

Project description:Leuconostoc kimchii strain C2 was isolated from fermented kimchi in Korea. Here we announce the complete genome sequence of Leuconostoc kimchii strain C2, consisting of a 1,877,174-bp chromosome with a G+C content of 37.9% and no plasmid and describe major findings from its annotation.

| S-EPMC3187422 | biostudies-literature

Draft Genome Sequence of Pediococcus pentosaceus MZF16, a Bacteriocinogenic Probiotic Strain Isolated from Dried Ossban in Tunisia.

Project description:Pediococcus pentosaceus strain MZF16 was isolated from dried ossban, a Tunisian dry fermented meat. The MZF16 chromosome consisted of 28 contigs with a total draft genome size of 1,928,373?bp and a G+C content of 37.2%. This is the first genome characterization of a P. pentosaceus strain isolated from traditional Tunisian meat.

| S-EPMC6486256 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data