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Enrichment of mutations in chromatin regulators in people with Rett syndrome lacking mutations in MECP2.


ABSTRACT: Rett syndrome (RTT) is a neurodevelopmental disorder caused primarily by de novo mutations in MECP2 and sometimes in CDKL5 and FOXG1. However, some RTT patients lack mutations in these genes.Twenty-two RTT patients without apparent MECP2, CDKL5, and FOXG1 mutations were subjected to both whole-exome sequencing and single-nucleotide polymorphism array-based copy-number variant (CNV) analyses.Three patients had MECP2 mutations initially missed by clinical testing. Of the remaining 19, 17 (89.5%) had 29 other likely pathogenic intragenic mutations and/or CNVs (10 patients had 2 or more). Interestingly, 13 patients had mutations in a gene/region previously reported in other neurodevelopmental disorders (NDDs), thereby providing a potential diagnostic yield of 68.4%. These mutations were significantly enriched in chromatin regulators (corrected P = 0.0068) and moderately enriched in postsynaptic cell membrane molecules (corrected P = 0.076), implicating glutamate receptor signaling.The genetic etiology of RTT without MECP2, CDKL5, and FOXG1 mutations is heterogeneous, overlaps with other NDDs, and complicated by a high mutation burden. Dysregulation of chromatin structure and abnormal excitatory synaptic signaling may form two common pathological bases of RTT.Genet Med 19 1, 13-19.

SUBMITTER: Sajan SA 

PROVIDER: S-EPMC5107176 | biostudies-literature | 2017 Jan

REPOSITORIES: biostudies-literature

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Enrichment of mutations in chromatin regulators in people with Rett syndrome lacking mutations in MECP2.

Sajan Samin A SA   Jhangiani Shalini N SN   Muzny Donna M DM   Gibbs Richard A RA   Lupski James R JR   Glaze Daniel G DG   Kaufmann Walter E WE   Skinner Steven A SA   Annese Fran F   Friez Michael J MJ   Lane Jane J   Percy Alan K AK   Neul Jeffrey L JL  

Genetics in medicine : official journal of the American College of Medical Genetics 20160512 1


<h4>Purpose</h4>Rett syndrome (RTT) is a neurodevelopmental disorder caused primarily by de novo mutations in MECP2 and sometimes in CDKL5 and FOXG1. However, some RTT patients lack mutations in these genes.<h4>Methods</h4>Twenty-two RTT patients without apparent MECP2, CDKL5, and FOXG1 mutations were subjected to both whole-exome sequencing and single-nucleotide polymorphism array-based copy-number variant (CNV) analyses.<h4>Results</h4>Three patients had MECP2 mutations initially missed by cli  ...[more]

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