Unknown

Dataset Information

0

The crystal structure of dihydrodipicolinate reductase from the human-pathogenic bacterium Bartonella henselae strain Houston-1 at 2.3?A resolution.


ABSTRACT: In bacteria, the second committed step in the diaminopimelate/lysine anabolic pathways is catalyzed by the enzyme dihydrodipicolinate reductase (DapB). DapB catalyzes the reduction of dihydrodipicolinate to yield tetrahydrodipicolinate. Here, the cloning, expression, purification, crystallization and X-ray diffraction analysis of DapB from the human-pathogenic bacterium Bartonella henselae, the causative bacterium of cat-scratch disease, are reported. Protein crystals were grown in conditions consisting of 5%(w/v) PEG 4000, 200?mM sodium acetate, 100?mM sodium citrate tribasic pH 5.5 and were shown to diffract to ?2.3?Å resolution. They belonged to space group P4322, with unit-cell parameters a = 109.38, b = 109.38, c = 176.95?Å. Rr.i.m. was 0.11, Rwork was 0.177 and Rfree was 0.208. The three-dimensional structural features of the enzymes show that DapB from B. henselae is a tetramer consisting of four identical polypeptides. In addition, the substrate NADP+ was found to be bound to one monomer, which resulted in a closed conformational change in the N-terminal domain.

SUBMITTER: Cala AR 

PROVIDER: S-EPMC5137465 | biostudies-literature | 2016 Dec

REPOSITORIES: biostudies-literature

altmetric image

Publications

The crystal structure of dihydrodipicolinate reductase from the human-pathogenic bacterium Bartonella henselae strain Houston-1 at 2.3 Å resolution.

Cala Ali R AR   Nadeau Maria T MT   Abendroth Jan J   Staker Bart L BL   Reers Alexandra R AR   Weatherhead Anthony W AW   Dobson Renwick C J RC   Myler Peter J PJ   Hudson André O AO  

Acta crystallographica. Section F, Structural biology communications 20161125 Pt 12


In bacteria, the second committed step in the diaminopimelate/lysine anabolic pathways is catalyzed by the enzyme dihydrodipicolinate reductase (DapB). DapB catalyzes the reduction of dihydrodipicolinate to yield tetrahydrodipicolinate. Here, the cloning, expression, purification, crystallization and X-ray diffraction analysis of DapB from the human-pathogenic bacterium Bartonella henselae, the causative bacterium of cat-scratch disease, are reported. Protein crystals were grown in conditions co  ...[more]

Similar Datasets

| S-EPMC4708043 | biostudies-literature
| PRJNA382325 | ENA
| PRJNA196 | ENA
| S-EPMC387567 | biostudies-literature
2024-01-23 | PXD048805 | Pride
| S-EPMC229743 | biostudies-other
| S-EPMC3367652 | biostudies-literature
| S-EPMC154595 | biostudies-literature
| PRJNA35245 | ENA
| PRJNA274779 | ENA