Dataset Information

Patchiness of Ciliate Communities Sampled at Varying Spatial Scales along the New England Shelf.

ABSTRACT: Although protists (microbial eukaryotes) provide an important link between bacteria and Metazoa in food webs, we do not yet have a clear understanding of the spatial scales on which protist diversity varies. Here, we use a combination of DNA fingerprinting (denaturant gradient gel electrophoresis or DGGE) and high-throughput sequencing (HTS) to assess the ciliate community in the class Spirotrichea at varying scales of 1-3 km sampled in three locations separated by at least 25 km-offshore, midshelf and inshore-along the New England shelf. Analyses of both abundant community (DGGE) and the total community (HTS) members reveal that: 1) ciliate communities are patchily distributed inshore (i.e. the middle station of a transect is distinct from its two neighboring stations), whereas communities are more homogeneous among samples within the midshelf and offshore stations; 2) a ciliate closely related to Pelagostrobilidium paraepacrum 'blooms' inshore and; 3) environmental factors may differentially impact the distributions of individual ciliates (i.e. OTUs) rather than the community as a whole as OTUs tend to show distinct biogeographies (e.g. some OTUs are restricted to the offshore locations, some to the surface, etc.). Together, these data show the complexity underlying the spatial distributions of marine protists, and suggest that biogeography may be a property of ciliate species rather than communities.

SUBMITTER: Grattepanche JD

PROVIDER: S-EPMC5147948 | biostudies-literature | 2016

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Patchiness of Ciliate Communities Sampled at Varying Spatial Scales along the New England Shelf.

Grattepanche Jean-David JD McManus George B GB Katz Laura A LA

PloS one 20161209 12

Although protists (microbial eukaryotes) provide an important link between bacteria and Metazoa in food webs, we do not yet have a clear understanding of the spatial scales on which protist diversity varies. Here, we use a combination of DNA fingerprinting (denaturant gradient gel electrophoresis or DGGE) and high-throughput sequencing (HTS) to assess the ciliate community in the class Spirotrichea at varying scales of 1-3 km sampled in three locations separated by at least 25 km-offshore, midsh ...[more]

PMID: 27936137

Similar Datasets

Project description:Urbanization is a major contributor to biodiversity declines. However, studies assessing effects of urban landscapes per se (i.e., disentangled from focal habitat effects) on biodiversity across spatial scales are lacking. Understanding such scale-dependent effects is fundamental to preserve habitats along an urbanization gradient in a way that maximizes overall biodiversity. We investigated the impact of landscape urbanization on communities of woodland-breeding bird species in individual (local scale) and across multiple (regional scale) cities, while controlling for the quality of sampled habitats (woodlands). We conducted bird point counts and habitat quality mapping of trees, dead wood, and shrubs in 459 woodlands along an urban to rural urbanization gradient in 32 cities in Sweden. Responses to urbanization were measured as local and regional total diversity (γ), average site diversity (α), and diversity between sites (β). We also assessed effects on individual species and to what extent dissimilarities in species composition along the urbanization gradient were driven by species nestedness or turnover. We found that landscape urbanization had a negative impact on γ-, α-, and β-diversity irrespective of spatial scale, both regarding all woodland-breeding species and red-listed species. At the regional scale, dissimilarities in species composition between urbanization levels were due to nestedness, that is, species were lost with increased landscape urbanization without being replaced. In contrast, dissimilarities at the local scale were mostly due to species turnover. Because there was no difference in habitat quality among woodlands across the urbanization gradient, we conclude that landscape urbanization as such systematically causes poorer and more homogeneous bird communities in adjacent natural habitats. However, the high local turnover and the fact that several species benefited from urbanization demonstrates that natural habitats along the entire urbanization gradient are needed to maintain maximally diverse local bird communities.

Project description:Seagrass beds provide important habitat for a wide range of marine species but are threatened by multiple human impacts in coastal waters. Although seagrass communities have been well-studied in the field, a quantification of their food-web structure and functioning, and how these change across space and human impacts has been lacking. Motivated by extensive field surveys and literature information, we analyzed the structural features of food webs associated with Zostera marina across 16 study sites in 3 provinces in Atlantic Canada. Our goals were to (i) quantify differences in food-web structure across local and regional scales and human impacts, (ii) assess the robustness of seagrass webs to simulated species loss, and (iii) compare food-web structure in temperate Atlantic seagrass beds with those of other aquatic ecosystems. We constructed individual food webs for each study site and cumulative webs for each province and the entire region based on presence/absence of species, and calculated 16 structural properties for each web. Our results indicate that food-web structure was similar among low impact sites across regions. With increasing human impacts associated with eutrophication, however, food-web structure show evidence of degradation as indicated by fewer trophic groups, lower maximum trophic level of the highest top predator, fewer trophic links connecting top to basal species, higher fractions of herbivores and intermediate consumers, and higher number of prey per species. These structural changes translate into functional changes with impacted sites being less robust to simulated species loss. Temperate Atlantic seagrass webs are similar to a tropical seagrass web, yet differed from other aquatic webs, suggesting consistent food-web characteristics across seagrass ecosystems in different regions. Our study illustrates that food-web structure and functioning of seagrass habitats change with human impacts and that the spatial scale of food-web analysis is critical for determining results.

Project description:Vineyards are likely to be regionally important for wildlife, but we lack biodiversity studies in this agroecosystem which is undergoing a rapid management revolution. As vine cultivation is restricted to arid and warm climatic regions, biodiversity-friendly management would promote species typical of southern biomes. Vineyards are often intensively cultivated, mostly surrounded by few natural features and offering a fairly mineral appearance with little ground vegetation cover. Ground vegetation cover and composition may further strongly vary with respect to season, influencing patterns of habitat selection by ecological communities. We investigated season-specific bird-habitat associations to highlight the importance of semi-natural habitat features and vineyard ground vegetation cover throughout the year. Given that avian habitat selection varies according to taxa, guilds and spatial scale, we modelled bird-habitat associations in all months at two spatial scales using mixed effects regression models. At the landscape scale, birds were recorded along 10 1-km long transects in Southwestern Switzerland (February 2014 -January 2015). At the field scale, we compared the characteristics of visited and unvisited vineyard fields (hereafter called parcels). Bird abundance in vineyards tripled in winter compared to summer. Vineyards surrounded by a greater amount of hedges and small woods harboured higher bird abundance, species richness and diversity, especially during the winter season. Regarding ground vegetation, birds showed a season-specific habitat selection pattern, notably a marked preference for ground-vegetated parcels in winter and for intermediate vegetation cover in spring and summer. These season-specific preferences might be related to species-specific life histories: more insectivorous, ground-foraging species occur during the breeding season whereas granivores predominate in winter. These results highlight the importance of investigating habitat selection at different spatial scales and all along the annual cycle in order to draw practical, season-specific management recommendations for promoting avian biodiversity in farmland.

Dataset Information

Patchiness of Ciliate Communities Sampled at Varying Spatial Scales along the New England Shelf.

Publications

Patchiness of Ciliate Communities Sampled at Varying Spatial Scales along the New England Shelf.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets