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RNAcentral: a comprehensive database of non-coding RNA sequences.


ABSTRACT: RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/.

SUBMITTER: The RNAcentral Consortium 

PROVIDER: S-EPMC5210518 | biostudies-literature | 2017 Jan

REPOSITORIES: biostudies-literature

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RNAcentral: a comprehensive database of non-coding RNA sequences.

Petrov Anton I AI   Kay Simon J E SJE   Kalvari Ioanna I   Howe Kevin L KL   Gray Kristian A KA   Bruford Elspeth A EA   Kersey Paul J PJ   Cochrane Guy G   Finn Robert D RD   Bateman Alex A   Kozomara Ana A   Griffiths-Jones Sam S   Frankish Adam A   Zwieb Christian W CW   Lau Britney Y BY   Williams Kelly P KP   Chan Patricia P PP   Lowe Todd M TM   Cannone Jamie J JJ   Gutell Robin R   Machnicka Magdalena A MA   Bujnicki Janusz M JM   Yoshihama Maki M   Kenmochi Naoya N   Chai Benli B   Cole James R JR   Szymanski Maciej M   Karlowski Wojciech M WM   Wood Valerie V   Huala Eva E   Berardini Tanya Z TZ   Zhao Yi Y   Chen Runsheng R   Zhu Weimin W   Paraskevopoulou Maria D MD   Vlachos Ioannis S IS   Hatzigeorgiou Artemis G AG   Ma Lina L   Zhang Zhang Z   Puetz Joern J   Stadler Peter F PF   McDonald Daniel D   Basu Siddhartha S   Fey Petra P   Engel Stacia R SR   Cherry J Michael JM   Volders Pieter-Jan PJ   Mestdagh Pieter P   Wower Jacek J   Clark Michael B MB   Quek Xiu Cheng XC   Dinger Marcel E ME  

Nucleic acids research 20161028 D1


RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to un  ...[more]

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