Resurrection of the genus Aphyllon for New World broomrapes (Orobanche s.l., Orobanchaceae).
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ABSTRACT:
SUBMITTER: Schneider AC
PROVIDER: S-EPMC5234541 | biostudies-literature | 2016
REPOSITORIES: biostudies-literature
Publications
Resurrection of the genus Aphyllon for New World broomrapes (Orobanche s.l., Orobanchaceae).
PhytoKeys 20161209 75
Recent phylogenetic studies support a monophyletic clade of New World broomrapes (Orobanche sects. Gymnocaulis and Nothaphyllon) sister to the Old World genus Phelipanche. I place the New World taxa in the genus Aphyllon, propose 21 new combinations, and provide a list of currently accepted taxa. ...[more]
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Project description:Background and aimsThe broomrapes, Orobanche sensu lato (Orobanchaceae), are common root parasites found across Eurasia, Africa and the Americas. All species native to the western hemisphere, recognized as Orobanche sections Gymnocaulis and Nothaphyllon, form a clade that has a centre of diversity in western North America, but also includes four disjunct species in central and southern South America. The wide ecological distribution coupled with moderate taxonomic diversity make this clade a valuable model system for studying the role, if any, of host-switching in driving the diversification of plant parasites.MethodsTwo spacer regions of ribosomal nuclear DNA (ITS + ETS), three plastid regions and one low-copy nuclear gene were sampled from 163 exemplars of Orobanche from across the native geographic range in order to infer a detailed phylogeny. Together with comprehensive data on the parasites' native host ranges, associations between phylogenetic lineages and host specificity are tested.Key resultsWithin the two currently recognized species of O. sect. Gymnocaulis, seven strongly supported clades were found. While commonly sympatric, members of these clades each had unique host associations. Strong support for cryptic host-specific diversity was also found in sect. Nothaphyllon, while other taxonomic species were well supported. We also find strong evidence for multiple amphitropical dispersals from central North America into South America.ConclusionsHost-switching is an important driver of diversification in western hemisphere broomrapes, where host specificity has been grossly underestimated. More broadly, host specificity and host-switching probably play fundamental roles in the speciation of parasitic plants.
| S-EPMC5091723 | biostudies-literature
Project description:The present review gives an overview about natural products from the holoparasitic genus Orobanche (Orobanchaceae). We cover both genuine natural products as well as compounds sequestered by Orobanche taxa from their host plants. However, the distinction between these two categories is not always easy. In cases where the respective authors had not indicated the opposite, all compounds detected in Orobanche taxa were regarded as genuine Orobanche natural products. From the about 200 species of Orobanche s.l. (i.e., including Phelipanche) known worldwide, only 26 species have so far been investigated phytochemically (22 Orobanche and four Phelipanche species), from 17 Orobanche and three Phelipanche species defined natural products (and not only natural product classes) have been reported. For two species of Orobanche and one of Phelipanche dedicated studies have been performed to analyze the phenomenon of natural product sequestration by parasitic plants from their host plants. In total, 70 presumably genuine natural products and 19 sequestered natural products have been described from Orobanche s.l.; these form the basis of 140 chemosystematic records (natural product reports per taxon). Bioactivities described for Orobanche s.l. extracts and natural products isolated from Orobanche species include in addition to antioxidative and anti-inflammatory effects, e.g., analgesic, antifungal and antibacterial activities, inhibition of amyloid ? aggregation, memory enhancing effects as well as anti-hypertensive effects, inhibition of blood platelet aggregation, and diuretic effects. Moreover, muscle relaxant and anti-spasmodic effects as well as anti-photoaging effects have been described.
| S-EPMC6278508 | biostudies-other
Project description:Molecular phylogenetic studies have greatly improved our understanding of phylogenetic relationships of non-photosynthetic parasitic broomrapes (Orobanche and related genera, Orobanchaceae), but a few genera have remained unstudied. One of those is Platypholis, whose sole species, Platypholis boninsimae, is restricted to the Bonin-Islands (Ogasawara Islands) about 1000 km southeast of Japan. Based on overall morphological similarity, Platypholis has been merged with Orobanche, but this hypothesis has never been tested with molecular data. Employing maximum likelihood and Bayesian analyses on a family-wide data set (two plastid markers, matK and rps2, and three nuclear markers, ITS, phyA and phyB) as well as on an ITS data set focusing on Orobanche s. str., it is shown that P. boninsimae Maxim. is phylogenetically closely linked to or even nested within Orobanche s. str. This position is supported both by morphological evidence and by the newly obtained chromosome number of 2n?=?38, which is characteristic for the genus Orobanche s. str.
| S-EPMC5318490 | biostudies-literature
Project description:Based on traditional morphological and phylogenetic analyses (ITS, LSU, tef-1α and β-tub) of psathyrelloid specimens collected from China, four new species are here described: Heteropsathyrella macrocystidia, Psathyrella amygdalinospora, P. piluliformoides, and P. truncatisporoides. H. macrocystidia forms a distinct lineage and groups together with Cystoagaricus, Kauffmania, and Typhrasa in the /Psathyrella s.l. clade, based on the Maximum Likelihood and Bayesian analyses. Thus, the monospecific genus Heteropsathyrella gen. nov. is introduced for the single species. Detailed descriptions, colour photos, and illustrations are presented in this paper.
| S-EPMC8172522 | biostudies-literature
Project description:Triaenophora shennongjiaensis (Orobanchaceae sensu lato) is a recently described rare and endangered species endemic to Central China. In this study, the complete chloroplast (cp) genome of T. shennpongjiaensis was assembled based on reads obtained with the Illumina HiSeq platform. The cp genome of T. shennongjiaensis was 15,5319?bp in length and contained a pair of inverted repeat (IR, 27,484?bp) regions separated by a small single copy (SSC, 15,450?bp) and a large single copy (LSC, 84,901?bp) region. It encoded 112 genes including 78 protein-coding genes, 30 tRNA genes, and eight ribosomal RNA genes. The overall AT content of T. shennongjiaensis cp genome is 61.9%. The maximum likelihood phylogenetic analysis supports T. shennongjiaensis as sister to Rehmannia. This result will be helpful for the systematics, conservation, and breeding programs of Triaenophora.
| S-EPMC7799507 | biostudies-literature
Project description:Orobanche cumana is a holoparasitic plant naturally distributed from central Asia to south-eastern Europe, where it parasitizes wild Asteraceae species. It is also an important parasitic weed of sunflower crops. The objective of this research was to investigate genetic diversity, population structure, and virulence on sunflower of O. cumana populations parasitizing wild plants in eastern Bulgaria. Fresh tissue of eight O. cumana populations and mature seeds of four of them were collected in situ on wild hosts. Genetic diversity and population structure were studied with SSR markers and compared to weedy populations. Two main gene pools were identified in Bulgarian populations, with most of the populations having intermediate characteristics. Cross-inoculation experiments revealed that O. cumana populations collected on wild species possessed similar ability to parasitize sunflower to those collected on sunflower. The results were explained on the basis of an effective genetic exchange between populations parasitizing sunflower crops and those parasitizing wild species. The occurrence of bidirectional gene flow may have an impact on wild populations, as new physiological races continuously emerge in weedy populations. Also, genetic variability of wild populations may favour the ability of weedy populations to overcome sunflower resistance mechanisms.
| S-EPMC4131075 | biostudies-literature
Project description:PREMISE OF THE STUDY:Microsatellite primers were developed for the first time in the root hemiparasite herb Odontites vernus (Orobanchaceae). These markers will be useful to investigate the role of polyploidization in the evolution of this diploid-tetraploid complex, as well as the extent of gene flow between different ploidy levels. METHODS AND RESULTS:Fourteen polymorphic and reproducible loci were identified and optimized from O. vernus using a microsatellite-enriched library and 454 Junior sequencing. The set of primers amplified di- to pentanucleotide repeats and showed two to 13 alleles per locus. Transferability was tested in 30 taxa (19 belonging to Odontites and 11 from eight other genera of Orobanchaceae tribe Rhinantheae). CONCLUSIONS:The results indicate the utility of the newly developed microsatellites in O. vernus and several other species, which will be useful for taxon delimitation and conservation genetics studies.
| S-EPMC4795918 | biostudies-literature
Project description:We report on the occurrence of Orobanche krylowii in the Alpet Shqiptare (Prokletije, Albanian Alps) mountain range in northern Albania (Balkan Peninsula). The species was previously known only from eastern-most Europe (Volga-Kama River in Russia), more than 2500 km away, and from adjacent Siberia and Central Asia. We used morphological evidence as well as nuclear ribosomal ITS sequences to show that the Albanian population indeed belongs to O. krylowii and that its closest relative is the European O. lycoctoni, but not O. elatior as assumed in the past. Both Orobanche krylowii and O. lycoctoni parasitize Ranunculaceae (Thalictrum spp. and Aconitum lycoctonum, respectively). We provide an identification key and a taxonomic treatment for O. krylowii, and suggest the IUCN category CE (critically endangered) for the highly disjunct Albanian population.
| S-EPMC3868937 | biostudies-literature
Project description:BackgroundThe apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3 (APOBEC3; A3) gene family appears only in mammalian genomes. Some A3 proteins can be incorporated into progeny virions and inhibit lentiviral replication. In turn, the lentiviral viral infectivity factor (Vif) counteracts the A3-mediated antiviral effect by degrading A3 proteins. Recent investigations have suggested that lentiviral vif genes evolved to combat mammalian APOBEC3 proteins, and have further proposed that the Vif-A3 interaction may help determine the co-evolutionary history of cross-species lentiviral transmission in mammals.ResultsHere we address the co-evolutionary relationship between two New World felids, the puma (Puma concolor) and the bobcat (Lynx rufus), and their lentiviruses, which are designated puma lentiviruses (PLVs). We demonstrate that PLV-A Vif counteracts the antiviral action of APOBEC3Z3 (A3Z3) of both puma and bobcat, whereas PLV-B Vif counteracts only puma A3Z3. The species specificity of PLV-B Vif is irrespective of the phylogenic relationships of feline species in the genera Puma, Lynx and Acinonyx. We reveal that the amino acid at position 178 in the puma and bobcat A3Z3 is exposed on the protein surface and determines the sensitivity to PLV-B Vif-mediated degradation. Moreover, although both the puma and bobcat A3Z3 genes are polymorphic, their sensitivity/resistance to PLV Vif-mediated degradation is conserved.ConclusionsTo the best of our knowledge, this is the first study suggesting that the host A3 protein potently controls inter-genus lentiviral transmission. Our findings provide the first evidence suggesting that the co-evolutionary arms race between lentiviruses and mammals has occurred in the New World.
| S-EPMC5894237 | biostudies-literature
Project description:The genus Calliscelio Ashmead is presumed to be a diverse group of parasitoids of the eggs of crickets (Orthoptera: Gryllidae). A least one species has been found to be an important factor in depressing cricket pest populations. The New World species of Calliscelio are revised. Forty-two species are recognized, 3 are redescribed: Calliscelio bisulcatus (Kieffer), Calliscelio laticinctus Ashmead, Calliscelio rubriclavus (Ashmead), comb. n.; and 38 are described as new: Calliscelio absconditum Chen & Johnson, sp. n., Calliscelio absum Chen & Johnson, sp. n., Calliscelio alcoa Chen & Masner, sp. n., Calliscelio amadoi Chen & Johnson, sp. n., Calliscelio armila Chen & Masner, sp. n., Calliscelio bidens Chen & Masner, sp. n., Calliscelio brachys Chen & Johnson, sp. n., Calliscelio brevinotaulus Chen & Johnson, sp. n., Calliscelio brevitas Chen & Johnson, sp. n., Calliscelio carinigena Chen & Johnson, sp. n., Calliscelio crater Chen & Johnson, sp. n., Calliscelio crena Chen & Johnson, sp. n., Calliscelio eboris Chen & Johnson, sp. n., Calliscelio extenuatus Chen & Johnson, sp. n., Calliscelio flavicauda Chen & Johnson, sp. n., Calliscelio foveolatus Chen & Johnson, sp. n., Calliscelio gatineau Chen & Johnson, sp. n., Calliscelio glaber Chen & Masner, sp. n., Calliscelio granulatus Chen & Masner, sp. n., Calliscelio latifrons Chen & Johnson, sp. n., Calliscelio levis Chen & Johnson, sp. n., Calliscelio longius Chen & Johnson, sp. n., Calliscelio magnificus Chen & Masner, sp. n., Calliscelio migma Chen & Johnson, sp. n., Calliscelio minutia Chen & Johnson, sp. n., Calliscelio paraglaber Chen & Johnson, sp. n., Calliscelio pararemigio Chen & Masner, sp. n., Calliscelio prolixus Chen & Johnson, sp. n., Calliscelio punctatifrons Chen & Johnson, sp. n., Calliscelio remigio Chen & Masner, sp. n., Calliscelio ruga Chen & Johnson, sp. n., Calliscelio rugicoxa Chen & Masner, sp. n., Calliscelio sfina Chen & Johnson, sp. n., Calliscelio storea Chen & Johnson, sp. n., Calliscelio suni Chen & Johnson, sp. n., Calliscelio telum Chen & Johnson, sp. n., Calliscelio torqueo Chen & Johnson, sp. n., Calliscelio virga Chen & Johnson, sp. n. Four species are treated as junior synonyms of Calliscelio rubriclavus (Ashmead): Anteris nigriceps Ashmead, syn. n., Caloteleia marlattii Ashmead, syn. n., Caloteleia grenadensis Ashmead, syn. n., and Macroteleia ruskini Girault, syn. n.
| S-EPMC5345382 | biostudies-literature