Dataset Information

Close split of sorghum and maize genome progenitors.

ABSTRACT: It is generally believed that maize (Zea mays L. ssp. mays) arose as a tetraploid; however, the two progenitor genomes cannot be unequivocally traced within the genome of modern maize. We have taken a new approach to investigate the origin of the maize genome. We isolated and sequenced large genomic fragments from the regions surrounding five duplicated loci from the maize genome and their orthologous loci in sorghum, and then we compared these sequences with the orthologous regions in the rice genome. Within the studied segments, we identified 11 genes that were conserved in location, order, and orientation. We performed phylogenetic and distance analyses and examined the patterns of estimated times of divergence for sorghum and maize gene orthologs and also the time of divergence for maize orthologs. Our results support a tetraploid origin of maize. This analysis also indicates contemporaneous divergence of the ancestral sorghum genome and the two maize progenitor genomes about 11.9 million years ago (Mya). On the basis of a putative conversion event detected for one of the genes, tetraploidization must have occurred before 4.8 Mya, and therefore, preceded the major maize genome expansion by gene amplification and retrotransposition.

SUBMITTER: Swigonova Z

PROVIDER: S-EPMC524415 | biostudies-literature | 2004 Oct

REPOSITORIES: biostudies-literature

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Close split of sorghum and maize genome progenitors.

Swigonová Zuzana Z Lai Jinsheng J Ma Jianxin J Ramakrishna Wusirika W Llaca Victor V Bennetzen Jeffrey L JL Messing Joachim J

Genome research 20041001 10A

It is generally believed that maize (Zea mays L. ssp. mays) arose as a tetraploid; however, the two progenitor genomes cannot be unequivocally traced within the genome of modern maize. We have taken a new approach to investigate the origin of the maize genome. We isolated and sequenced large genomic fragments from the regions surrounding five duplicated loci from the maize genome and their orthologous loci in sorghum, and then we compared these sequences with the orthologous regions in the rice ...[more]

PMID: 15466289

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Project description:Continued yield increases of maize (Zea mays L.) will require higher planting populations, and enhancement of other agronomic inputs could alleviate density-induced stress. Row spacing, plant population, P-S-Zn fertility, K-B fertility, N fertility, and foliar protection were evaluated for their individual and cumulative impacts on the productivity of maize in a maize-soybean [Glycine max (L.) Merr.] rotation. An incomplete factorial design with these agronomic factors in both 0.76 and 0.51 m row widths was implemented for 13 trials in Illinois, United States, from 2014 to 2018. The agronomic treatments were compared to two controls: enhanced and standard, comprising all the factors applied at the enhanced or standard level, respectively. The 0.51 m enhanced management control yielded 3.3 Mg ha-1 (1.8-4.6 Mg ha-1 across the environments) more grain (25%) than the 0.76 m standard management control, demonstrating the apparent yield gap between traditional farm practices and attainable yield through enhanced agronomic management. Narrow rows and the combination of P-S-Zn and K-B fertility were the factors that provided the most significant yield increases over the standard control. Increasing plant population from 79,000 to 109,000 plants ha-1 reduced the yield gap when all other inputs were applied at the enhanced level. However, increasing plant population alone did not increase yield when no other factors were enhanced. Some agronomic factors, such as narrow rows and availability of plant nutrition, become more critical with increasing plant population when density-induced stress is more significant. Changes in yield were dependent upon changes in kernel number. Kernel weight was the heaviest when all the management factors were applied at the enhanced level while only planting 79,000 plants ha-1. Conversely, kernel weight was the lightest when increasing population to 109,000 plants ha-1 while all other factors were applied at the standard level. The yield contribution of each factor was generally greater when applied in combination with all other enhanced factors than when added individually to the standard input system. Additionally, the full value of high-input agronomic management was only realized when matched with greater plant density.

Dataset Information

Close split of sorghum and maize genome progenitors.

Publications

Close split of sorghum and maize genome progenitors.

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