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The Genetic Landscape of Renal Complications in Type 1 Diabetes.


ABSTRACT: Diabetes is the leading cause of ESRD. Despite evidence for a substantial heritability of diabetic kidney disease, efforts to identify genetic susceptibility variants have had limited success. We extended previous efforts in three dimensions, examining a more comprehensive set of genetic variants in larger numbers of subjects with type 1 diabetes characterized for a wider range of cross-sectional diabetic kidney disease phenotypes. In 2843 subjects, we estimated that the heritability of diabetic kidney disease was 35% (P=6.4×10-3). Genome-wide association analysis and replication in 12,540 individuals identified no single variants reaching stringent levels of significance and, despite excellent power, provided little independent confirmation of previously published associated variants. Whole-exome sequencing in 997 subjects failed to identify any large-effect coding alleles of lower frequency influencing the risk of diabetic kidney disease. However, sets of alleles increasing body mass index (P=2.2×10-5) and the risk of type 2 diabetes (P=6.1×10-4) associated with the risk of diabetic kidney disease. We also found genome-wide genetic correlation between diabetic kidney disease and failure at smoking cessation (P=1.1×10-4). Pathway analysis implicated ascorbate and aldarate metabolism (P=9.0×10-6), and pentose and glucuronate interconversions (P=3.0×10-6) in pathogenesis of diabetic kidney disease. These data provide further evidence for the role of genetic factors influencing diabetic kidney disease in those with type 1 diabetes and highlight some key pathways that may be responsible. Altogether these results reveal important biology behind the major cause of kidney disease.

SUBMITTER: Sandholm N 

PROVIDER: S-EPMC5280020 | biostudies-literature | 2017 Feb

REPOSITORIES: biostudies-literature

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The Genetic Landscape of Renal Complications in Type 1 Diabetes.

Sandholm Niina N   Van Zuydam Natalie N   Ahlqvist Emma E   Juliusdottir Thorhildur T   Deshmukh Harshal A HA   Rayner N William NW   Di Camillo Barbara B   Forsblom Carol C   Fadista Joao J   Ziemek Daniel D   Salem Rany M RM   Hiraki Linda T LT   Pezzolesi Marcus M   Trégouët David D   Dahlström Emma E   Valo Erkka E   Oskolkov Nikolay N   Ladenvall Claes C   Marcovecchio M Loredana ML   Cooper Jason J   Sambo Francesco F   Malovini Alberto A   Manfrini Marco M   McKnight Amy Jayne AJ   Lajer Maria M   Harjutsalo Valma V   Gordin Daniel D   Parkkonen Maija M   Tuomilehto Jaakko J   Lyssenko Valeriya V   McKeigue Paul M PM   Rich Stephen S SS   Brosnan Mary Julia MJ   Fauman Eric E   Bellazzi Riccardo R   Rossing Peter P   Hadjadj Samy S   Krolewski Andrzej A   Paterson Andrew D AD   Florez Jose C JC   Hirschhorn Joel N JN   Maxwell Alexander P AP   Dunger David D   Cobelli Claudio C   Colhoun Helen M HM   Groop Leif L   McCarthy Mark I MI   Groop Per-Henrik PH  

Journal of the American Society of Nephrology : JASN 20160919 2


Diabetes is the leading cause of ESRD. Despite evidence for a substantial heritability of diabetic kidney disease, efforts to identify genetic susceptibility variants have had limited success. We extended previous efforts in three dimensions, examining a more comprehensive set of genetic variants in larger numbers of subjects with type 1 diabetes characterized for a wider range of cross-sectional diabetic kidney disease phenotypes. In 2843 subjects, we estimated that the heritability of diabetic  ...[more]

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