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Factors influencing the infant gut microbiome at age 3-6 months: Findings from the ethnically diverse Vitamin D Antenatal Asthma Reduction Trial (VDAART).


ABSTRACT: BACKGROUND:The gut microbiome in infancy influences immune system maturation, and may have an important impact on allergic disease risk. OBJECTIVE:We sought to determine how prenatal and early life factors impact the gut microbiome in a relatively large, ethnically diverse study population of infants at age 3 to 6 months, who were enrolled in Vitamin D Antenatal Asthma Reduction Trial, a clinical trial of vitamin D supplementation in pregnancy to prevent asthma and allergies in offspring. METHODS:We performed 16S rRNA gene sequencing on 333 infants' stool samples. Microbial diversity was computed using the Shannon index. Factor analysis applied to the top 25 most abundant taxa revealed 4 underlying bacterial coabundance groups; the first dominated by Firmicutes (Lachnospiraceae/Clostridiales), the second by Proteobacteria (Klebsiella/Enterobacter), the third by Bacteriodetes, and the fourth by Veillonella. Scores for coabundance groups were used as outcomes in regression models, with prenatal/birth and demographic characteristics as independent predictors. Multivariate analysis, using all microbial community members, was also conducted. RESULTS:White race/ethnicity was associated with lower diversity but higher Bacteroidetes coabundance scores. C-section birth was associated with higher diversity, but decreased Bacteroidetes coabundance scores. Firmicutes scores were higher for infants born by C-section. Breast-fed infants had lower proportions of Clostridiales. Cord blood vitamin D was linked to increased Lachnobacterium, but decreased Lactococcus. CONCLUSIONS:The findings presented here suggest that race, mode of delivery, breast-feeding, and cord blood vitamin D levels are associated with infant gut microbiome composition, with possible long-term implications for immune system modulation and asthma/allergic disease incidence.

SUBMITTER: Sordillo JE 

PROVIDER: S-EPMC5303123 | biostudies-literature | 2017 Feb

REPOSITORIES: biostudies-literature

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Factors influencing the infant gut microbiome at age 3-6 months: Findings from the ethnically diverse Vitamin D Antenatal Asthma Reduction Trial (VDAART).

Sordillo Joanne E JE   Zhou Yanjiao Y   McGeachie Michael J MJ   Ziniti John J   Lange Nancy N   Laranjo Nancy N   Savage Jessica R JR   Carey Vincent V   O'Connor George G   Sandel Megan M   Strunk Robert R   Bacharier Leonard L   Zeiger Robert R   Weiss Scott T ST   Weinstock George G   Gold Diane R DR   Litonjua Augusto A AA  

The Journal of allergy and clinical immunology 20161013 2


<h4>Background</h4>The gut microbiome in infancy influences immune system maturation, and may have an important impact on allergic disease risk.<h4>Objective</h4>We sought to determine how prenatal and early life factors impact the gut microbiome in a relatively large, ethnically diverse study population of infants at age 3 to 6 months, who were enrolled in Vitamin D Antenatal Asthma Reduction Trial, a clinical trial of vitamin D supplementation in pregnancy to prevent asthma and allergies in of  ...[more]

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