Karyotype and gene order evolution from reconstructed extinct ancestors highlight contrasts in genome plasticity of modern rosid crops.
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ABSTRACT:
SUBMITTER: Murat F
PROVIDER: S-EPMC5322550 | biostudies-literature | 2015 Jan
REPOSITORIES: biostudies-literature
Publications
Karyotype and gene order evolution from reconstructed extinct ancestors highlight contrasts in genome plasticity of modern rosid crops.
Murat Florent F Zhang Rongzhi R Guizard Sébastien S Gavranović Haris H Flores Raphael R Steinbach Delphine D Quesneville Hadi H Tannier Eric E Salse Jérôme J
Genome biology and evolution 20150129 3
We used nine complete genome sequences, from grape, poplar, Arabidopsis, soybean, lotus, apple, strawberry, cacao, and papaya, to investigate the paleohistory of rosid crops. We characterized an ancestral rosid karyotype, structured into 7/21 protochomosomes, with a minimal set of 6,250 ordered protogenes and a minimum physical coding gene space of 50 megabases. We also proposed ancestral karyotypes for the Caricaceae, Brassicaceae, Malvaceae, Fabaceae, Rosaceae, Salicaceae, and Vitaceae familie ...[more]
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