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GenePANDA-a novel network-based gene prioritizing tool for complex diseases.


ABSTRACT: Here we describe GenePANDA, a novel network-based tool for prioritizing candidate disease genes. GenePANDA assesses whether a gene is likely a candidate disease gene based on its relative distance to known disease genes in a functional association network. A unique feature of GenePANDA is the introduction of adjusted network distance derived by normalizing the raw network distance between two genes with their respective mean raw network distance to all other genes in the network. The use of adjusted network distance significantly improves GenePANDA's performance on prioritizing complex disease genes. GenePANDA achieves superior performance over five previously published algorithms for prioritizing disease genes. Finally, GenePANDA can assist in prioritizing functionally important SNPs identified by GWAS.

SUBMITTER: Yin T 

PROVIDER: S-EPMC5333103 | biostudies-literature | 2017 Mar

REPOSITORIES: biostudies-literature

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GenePANDA-a novel network-based gene prioritizing tool for complex diseases.

Yin Tianshu T   Chen Shu S   Wu Xiaohui X   Tian Weidong W  

Scientific reports 20170302


Here we describe GenePANDA, a novel network-based tool for prioritizing candidate disease genes. GenePANDA assesses whether a gene is likely a candidate disease gene based on its relative distance to known disease genes in a functional association network. A unique feature of GenePANDA is the introduction of adjusted network distance derived by normalizing the raw network distance between two genes with their respective mean raw network distance to all other genes in the network. The use of adju  ...[more]

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