Using 3dRPC for RNA-protein complex structure prediction.
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ABSTRACT:
SUBMITTER: Huang Y
PROVIDER: S-EPMC5334405 | biostudies-literature | 2016
REPOSITORIES: biostudies-literature
Publications
Using 3dRPC for RNA-protein complex structure prediction.
Huang Yangyu Y Li Haotian H Xiao Yi Y
Biophysics reports 20160101 5
3dRPC is a computational method designed for three-dimensional RNA-protein complex structure prediction. Starting from a protein structure and a RNA structure, 3dRPC first generates presumptive complex structures by RPDOCK and then evaluates the structures by RPRANK. RPDOCK is an FFT-based docking algorithm that takes features of RNA-protein interactions into consideration, and RPRANK is a knowledge-based potential using root mean square deviation as a measure. Here we give a detailed descriptio ...[more]
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