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Ancient DNA Reveals Late Pleistocene Existence of Ostriches in Indian Sub-Continent.

ABSTRACT: Ancient DNA (aDNA) analysis of extinct ratite species is of considerable interest as it provides important insights into their origin, evolution, paleogeographical distribution and vicariant speciation in congruence with continental drift theory. In this study, DNA hotspots were detected in fossilized eggshell fragments of ratites (dated ?25000 years B.P. by radiocarbon dating) using confocal laser scanning microscopy (CLSM). DNA was isolated from five eggshell fragments and a 43 base pair (bp) sequence of a 16S rRNA mitochondrial-conserved region was successfully amplified and sequenced from one of the samples. Phylogenetic analysis of the DNA sequence revealed a 92% identity of the fossil eggshells to Struthio camelus and their position basal to other palaeognaths, consistent with the vicariant speciation model. Our study provides the first molecular evidence for the presence of ostriches in India, complementing the continental drift theory of biogeographical movement of ostriches in India, and opening up a new window into the evolutionary history of ratites.

SUBMITTER: Jain S

PROVIDER: S-EPMC5342186 | biostudies-literature | 2017

REPOSITORIES: biostudies-literature

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Ancient DNA Reveals Late Pleistocene Existence of Ostriches in Indian Sub-Continent.

Jain Sonal S Rai Niraj N Kumar Giriraj G Pruthi Parul Aggarwal PA Thangaraj Kumarasamy K Bajpai Sunil S Pruthi Vikas V

PloS one 20170308 3

Ancient DNA (aDNA) analysis of extinct ratite species is of considerable interest as it provides important insights into their origin, evolution, paleogeographical distribution and vicariant speciation in congruence with continental drift theory. In this study, DNA hotspots were detected in fossilized eggshell fragments of ratites (dated ≥25000 years B.P. by radiocarbon dating) using confocal laser scanning microscopy (CLSM). DNA was isolated from five eggshell fragments and a 43 base pair (bp) ...[more]

PMID: 28273082

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Project description:BackgroundThe contemporary Italian wolf (Canis lupus italicus) represents a case of morphological and genetic uniqueness. Today, Italian wolves are also the only documented population to fall exclusively within the mitochondrial haplogroup 2, which was the most diffused across Eurasian and North American wolves during the Late Pleistocene. However, the dynamics leading to such distinctiveness are still debated.MethodsIn order to shed light on the ancient genetic variability of this wolf population and on the origin of its current diversity, we collected 19 Late Pleistocene-Holocene samples from northern Italy, which we analyzed at a short portion of the hypervariable region 1 of the mitochondrial DNA, highly informative for wolf and dog phylogenetic analyses.ResultsFour out of the six detected haplotypes matched the ones found in ancient wolves from northern Europe and Beringia, or in modern European and Chinese wolves, and appeared closely related to the two haplotypes currently found in Italian wolves. The haplotype of two Late Pleistocene samples matched with primitive and contemporary dog sequences from the canine mitochondrial clade A. All these haplotypes belonged to haplogroup 2. The only exception was a Holocene sample dated 3,250 years ago, affiliated to haplogroup 1.DiscussionIn this study we describe the genetic variability of the most ancient wolf specimens from Italy analyzed so far, providing a preliminary overview of the genetic make-up of the population that inhabited this area from the last glacial maximum to the Middle Age period. Our results endorsed that the genetic diversity carried by the Pleistocene wolves here analyzed showed a strong continuity with other northern Eurasian wolf specimens from the same chronological period. Contrarily, the Holocene samples showed a greater similarity only with modern sequences from Europe and Asia, and the occurrence of an haplogroup 1 haplotype allowed to date back previous finding about its presence in this area. Moreover, the unexpected discovery of a 24,700-year-old sample carrying a haplotype that, from the fragment here obtained, falls within the canine clade A, could represent the oldest evidence in Europe of such dog-rich clade. All these findings suggest complex population dynamics that deserve to be further investigated based on mitochondrial or whole genome sequencing.

Project description:Drought is a natural disaster affects water resources, agriculture, and social and economic development due to its long-term and frequent occurrence. It is crucial to characterize and monitor drought and its propagation to minimize the impact. However, spatiotemporal assessment of drought characteristics over India at the sub-basin scale based on terrestrial water storage is unexplored. In this study, the Terrestrial water storage anomalies (TWSA) obtained from a Gravity Recovery and Climate Experiment and precipitation data are used to characterize the propagation of drought. Combined Climatological Deviation Index (CCDI) and GRACE-Drought Severity Index (GRACE-DSI) were computed as CCDI utilizes both precipitation and TWSA data while GRACE-DSI uses only TWSA data. Our results showed that GRACE-DSI exhibits significant negative trends over most of the Indian sub-basins compared to CCDI, indicating that most of the drought events are due to depletion of TWS. While other sub-basins show changing trends for GRACE-DSI and CCDI. The number of sub-basins showing significant negative trends for GRACE-DSI is more than that for CCDI. Hence TWS is depleting for most of the subbasins in India. Our results show that Indo-Gangetic plains face many drought events during 2002-2004, 2009-2014 & 2015-2017. Maximum drought duration and drought severity obtained for the area of North Ladakh (not draining into Indus basins) by GRACE-DSI are 26 months (2002-2004) and - 44.2835, respectively. The maximum drought duration and drought severity obtained for the Shyok sub-basin by CCDI is 17 months (2013-2015) and - 13.4392, respectively. Monthly trend analysis revealed that 39 & 23 no. of sub-basins show significant negative GRACE-DSI trends for October and CCDI for November, respectively. At the same time, the seasonal trend shows that total 34 and 14 sub-basins exhibited a significant negative trend at post-monsoon Kharif season for both the GRACE-DSI & CCDI, respectively.

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Ancient DNA Reveals Late Pleistocene Existence of Ostriches in Indian Sub-Continent.

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Ancient DNA Reveals Late Pleistocene Existence of Ostriches in Indian Sub-Continent.

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