Dataset Information

A Community Multi-Omics Approach towards the Assessment of Surface Water Quality in an Urban River System.

ABSTRACT: A multi-omics approach was applied to an urban river system (the Brisbane River (BR), Queensland, Australia) in order to investigate surface water quality and characterize the bacterial population with respect to water contaminants. To do this, bacterial metagenomic amplicon-sequencing using Illumina next-generation sequencing (NGS) of the V5-V6 hypervariable regions of the 16S rRNA gene and untargeted community metabolomics using gas chromatography coupled with mass spectrometry (GC-MS) were utilized. The multi-omics data, in combination with fecal indicator bacteria (FIB) counts, trace metal concentrations (by inductively coupled plasma mass spectrometry (ICP-MS)) and in-situ water quality measurements collected from various locations along the BR were then used to assess the health of the river ecosystem. Sites sampled represented the transition from less affected (upstream) to polluted (downstream) environments along the BR. Chemometric analysis of the combined datasets indicated a clear separation between the sampled environments. Burkholderiales and Cyanobacteria were common key factors for differentiation of pristine waters. Increased sugar alcohol and short-chain fatty acid production was observed by Actinomycetales and Rhodospirillaceae that are known to form biofilms in urban polluted and brackish waters. Results from this study indicate that a multi-omics approach enables a deep understanding of the health of an aquatic ecosystem, providing insight into the bacterial diversity present and the metabolic output of the population when exposed to environmental contaminants.

SUBMITTER: Beale DJ

PROVIDER: S-EPMC5369139 | biostudies-literature | 2017 Mar

REPOSITORIES: biostudies-literature

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A Community Multi-Omics Approach towards the Assessment of Surface Water Quality in an Urban River System.

Beale David J DJ Karpe Avinash V AV Ahmed Warish W Cook Stephen S Morrison Paul D PD Staley Christopher C Sadowsky Michael J MJ Palombo Enzo A EA

International journal of environmental research and public health 20170314 3

A multi-omics approach was applied to an urban river system (the Brisbane River (BR), Queensland, Australia) in order to investigate surface water quality and characterize the bacterial population with respect to water contaminants. To do this, bacterial metagenomic amplicon-sequencing using Illumina next-generation sequencing (NGS) of the V5-V6 hypervariable regions of the 16S rRNA gene and untargeted community metabolomics using gas chromatography coupled with mass spectrometry (GC-MS) were ut ...[more]

PMID: 28335448

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Project description:Water plays a major role in supporting the wellness and life processes in living things as well as in the ecological structure's stabilities. However, several environmental scientists have recounted the alarming menace unfit water quality portends as well as the shortfalls of its global utilization in various spheres of life. This study aims to determine the fitness of the Ossiomo River and its likely health risk impact when consumed or used for other domestic purposes. The outcome of the physicochemical and heavy metal characterization showed that most of the parameters surpassed the slated benchmarks. Findings from the study revealed a significant difference (p < 0.05) for water temperature, color, TDS, BOD5, HCO3, Na, Fe, Mn, and THC across the four stations respectively. Meanwhile, pH, salinity, turbidity, TSS, DO, Cl, P, NH4H, NO2, NO3, SO4, Zn, Cu, Cr, Ni, Pb, and V showed no significant (p > 0.05) across the four stations respectively. The pH level of the water was slightly acidic at the range of 4.40-6.82. The outcome of the computed water quality index showed that station 1 (66.38) was poor for human ingestion which was above the set slated benchmarks of 26-50. However, stations 2-4 (163.79, 161.79, and 129.95) were unsuitable for drinking which was above the set slated benchmarks of 100. The outcome of the health risk evaluation revealed that the hazard quotients (HQs) were considered greater than 1 (>1) for Cr (2.55). The hazard index (0.46) via the dermal pathway was <1 while the ingestion (4.35) pathway was >1. The sum of the HQs (4.81) was also > 1. Thus, there are possible non-carcinogenic health risks via direct ingestion of the water. The outcome from the carcinogenic risk for Pb, Cr, and Cd (6 × 10-3, 4.00 × 10-1, and 1.22 × 100), was somewhat greater than the target goal (1.0 × 10-6 to 1.0 × 10-4) of carcinogenic risks stipulated by the United States Environmental Protection Agency for drinking water, respectively, especially for Cd. There might be a potential carcinogenic risk if the water is consumed when the metal contents are higher than the target limits set. Sustainable farming and treatment of wastes from industrial outputs should be the main management of this watercourse.

Dataset Information

A Community Multi-Omics Approach towards the Assessment of Surface Water Quality in an Urban River System.

Publications

A Community Multi-Omics Approach towards the Assessment of Surface Water Quality in an Urban River System.

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