Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete and Assembled Genome Sequence of Lactobacillus plantarum RI-113 Isolated from Salami.

ABSTRACT: We present here the complete genome sequence of Lactobacillus plantarum RI-113, a strain isolated from salami, which was determined using single-molecule real-time sequencing.

SUBMITTER: Inglin RC

PROVIDER: S-EPMC5399253 | biostudies-literature | 2017 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete and Assembled Genome Sequence of <i>Lactobacillus plantarum</i> RI-113 Isolated from Salami.

Inglin Raffael C RC Meile Leo L Klumpp Jochen J Stevens Marc J A MJA

Genome announcements 20170420 16

We present here the complete genome sequence of <i>Lactobacillus plantarum</i> RI-113, a strain isolated from salami, which was determined using single-molecule real-time sequencing. ...[more]

PMID: 28428294

Similar Datasets

Complete Genome Sequence of Lactobacillus plantarum Strain JDARSH, Isolated from Sheep Milk.

Project description:Lactobacillus plantarum strain JDARSH, a potential probiotic with a wide range of functions, was isolated from sheep milk. Here, we report the whole-genome sequence of this bacterium. The draft genome yielded a 3.20-Mb genome and 2,980 protein-coding sequences.

| S-EPMC6952652 | biostudies-literature

Complete genome sequence of Lactobacillus plantarum WCFS1.

Project description:The 3,308,274-bp sequence of the chromosome of Lactobacillus plantarum strain WCFS1, a single colony isolate of strain NCIMB8826 that was originally isolated from human saliva, has been determined, and contains 3,052 predicted protein-encoding genes. Putative biological functions could be assigned to 2,120 (70%) of the predicted proteins. Consistent with the classification of L. plantarum as a facultative heterofermentative lactic acid bacterium, the genome encodes all enzymes required for the glycolysis and phosphoketolase pathways, all of which appear to belong to the class of potentially highly expressed genes in this organism, as was evident from the codon-adaptation index of individual genes. Moreover, L. plantarum encodes a large pyruvate-dissipating potential, leading to various end-products of fermentation. L. plantarum is a species that is encountered in many different environmental niches, and this flexible and adaptive behavior is reflected by the relatively large number of regulatory and transport functions, including 25 complete PTS sugar transport systems. Moreover, the chromosome encodes >200 extracellular proteins, many of which are predicted to be bound to the cell envelope. A large proportion of the genes encoding sugar transport and utilization, as well as genes encoding extracellular functions, appear to be clustered in a 600-kb region near the origin of replication. Many of these genes display deviation of nucleotide composition, consistent with a foreign origin. These findings suggest that these genes, which provide an important part of the interaction of L. plantarum with its environment, form a lifestyle adaptation region in the chromosome.

| S-EPMC149946 | biostudies-literature

Complete genome sequence of Lactobacillus plantarum JDM1.

Project description:Lactobacillus plantarum is a lactic acid bacterium (LAB) species commonly used as a probiotic. We have sequenced the genome of Lactobacillus plantarum JDM1, which is a Chinese commercial LAB with several probiotic functions, using a GS 20 system. We recommend that each commercial probiotic strain should undergo complete genome sequencing to ensure safety and stability.

| S-EPMC2715720 | biostudies-literature

Complete genome sequence of the probiotic Lactobacillus plantarum ST-III.

Project description:Lactobacillus plantarum strain ST-III, a probiotic strain with several functions, was isolated from kimchi. Here we report the complete genome sequence of ST-III and compared it with two published L. plantarum genomes.

| S-EPMC3019943 | biostudies-literature

Complete genome sequence of the probiotic Lactobacillus plantarum strain ZJ316.

Project description:Lactobacillus plantarum strain ZJ316, a probiotic strain with several functions, was isolated from healthy newborn infant fecal samples. Here we report the finished and annotated genome sequence of this organism.

| S-EPMC3623005 | biostudies-literature

Complete Genome Sequence of Lactobacillus plantarum Oregon-R-modENCODE Strain BDGP2 Isolated from Drosophila melanogaster Gut.

Project description:Lactobacillus plantarum Oregon-R-modENCODE strain BDGP2 was isolated from the gut of Drosophila melanogaster for functional host microbial interaction studies. The complete genome comprised a single circular genome of 3,407,160 bp, with a G+C content of 44%, and four plasmids.

| S-EPMC5637513 | biostudies-literature

Draft Genome Sequence of Lactobacillus plantarum IYO1511, Isolated from Ishizuchi-Kurocha.

Project description:Lactobacillus plantarum IYO1511, isolated from a traditional postfermented tea, is a predominant species associated with Ishizuchi-kurocha. Here, we report the whole-genome sequence of this bacterium. The draft genome comprises 3,229,083 nucleotides and 3,044 coding DNA sequences (CDSs), with an average G+C content of 44.5%.

| S-EPMC7193925 | biostudies-literature

Draft Genome Sequence of Lactobacillus plantarum wikim18, Isolated from Korean Kimchi.

Project description:This report describes the draft genome sequence of Lactobacillus plantarum strain wikim18, isolated from the traditional Korean food kimchi. The reads generated by Ion Torrent PGM were assembled into 327 contigs. RAST annotation of the genome revealed 12 tRNAs and 3,316 protein-coding gene sequences.

| S-EPMC4031343 | biostudies-literature

Draft Genome Sequence of Lactobacillus plantarum EBKLp545, Isolated from Piglet Feces.

Project description:Lactobacillus plantarum strain EBKLp545 was isolated from piglet feces in South Korea and sequenced using an Illumina HiSeq system. This draft genome of strain EBKLp545 consists of 3,306,513 bp with 3,049 protein-coding genes in 138 contigs (≥500 bp), 54 noncoding RNA genes, and a 44.3% G+C content.

| S-EPMC6473157 | biostudies-literature

Draft Genome Sequence of Lactobacillus plantarum WLPL04, Isolated from Human Breast Milk.

Project description:Lactobacillus plantarum WLPL04, a novel strain, was isolated from a breast milk sample from a healthy woman and demonstrated several probiotic functions. Here, we present the draft genome sequence of this strain, which contains 3,192,587 bp, a G+C content of 44.52%, 3,158 protein-coding genes, and 53 tRNA genes.

| S-EPMC4675948 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data