Effects of flood irrigation on the risk of selected zoonotic pathogens in an arid and semi-arid area in the eastern Kenya.
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ABSTRACT:
SUBMITTER: Bett B
PROVIDER: S-EPMC5450996 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:Climate variability is the major risk to agricultural production in semi-arid agroecosystems and the key challenge to sustain farm livelihoods for the 500 million people who inhabit these areas worldwide. Short-season grain legumes have great potential to address this challenge and help to design more resilient and productive farming systems. However, grain legumes display a great diversity and differ widely in growth, development, and resource use efficiency. Three contrasting short season grain legumes common bean (Phaseolus vulgaris L.), cowpea (Vigna unguiculata (L.) Walp.] and lablab [Lablab purpureus (L.) Sweet] were selected to assess their agricultural potential with respect to climate variability and change along the Machakos-Makueni transect in semi-arid Eastern Kenya. This was undertaken using measured data [a water response trial conducted during 2012/13 and 2013/14 in Machakos, Kenya] and simulated data using the Agricultural Production System sIMulator (APSIM). The APSIM crop model was calibrated and validated to simulate growth and development of short-season grain legumes in semi-arid environments. Water use efficiency (WUE) was used as indicator to quantify the production potential. The major traits of adaptation include early flowering and pod and seed set before the onset of terminal drought. Early phenology together with adapted canopy architecture allowed more optimal water use and greater partitioning of dry matter into seed (higher harvest index). While common bean followed a comparatively conservative strategy of minimizing water loss through crop transpiration, the very short development time and compact growth habit limited grain yield to rarely exceed 1,000 kg ha-1. An advantage of this strategy was relatively stable yields independent of in-crop rainfall or season length across the Machakos-Makueni transect. The growth habit of cowpea in contrast minimized water loss through soil evaporation with rapid ground cover and dry matter production, reaching very high grain yields at high potential sites (3,000 kg ha-1) but being highly susceptible to in-season drought. Lablab seemed to be best adapted to dry environments. Its canopy architecture appeared to be best in compromising between the investment in biomass as a prerequisite to accumulate grain yield by minimizing water loss through soil evaporation and crop transpiration. This lead to grain yields of up to 2,000 kg ha-1 at high potential sites and >1,000 kg ha-1 at low potential sites. The variance of observed and simulated WUE was high and no clear dependency on total rainfall alone was observed for all three short-season grain legumes, highlighting that pattern of water use is also important in determining final WUEbiomass and WUEgrain. Mean WUEgrain was lowest for cowpea (1.5-3.5 kggrain ha-1 mm-1) and highest for lablab (5-7 kggrain ha-1 mm-1) reflecting the high susceptibility to drought of cowpea and the good adaptation to dry environments of lablab. Results highlight that, based on specific morphological, phonological, and physiological characteristics, the three short-season grain legumes follow different strategies to cope with climate variability. The climate-smart site-specific utilization of the three legumes offers promising options to design more resilient and productive farming systems in semi-arid Eastern Kenya.
| S-EPMC5422554 | biostudies-literature
Project description:Kenya is home to Africa's third largest population of dromedary camels, and production at commercial and local levels are increasingly important. In pastoral and nomadic communities in the arid and semi-arid lands (ASALs), camels play a vital role in food security, while commercial milk production and formalized export markets are rapidly emerging as camel populations expand into non-traditional areas. Until recently, little focus was placed on camels as hosts of zoonotic disease, but the emergence of Middle Eastern respiratory coronavirus (MERS-CoV) in 2012, and the discovery of exposure to the virus in Kenyan camels, highlighted the need for further understanding of this area. This systematised review utilised a robust search strategy to assess the occurrence of camel-associated zoonoses in Kenya and to evaluate the quality of the published literature. Seventy-four studies were identified, covering sixteen pathogens, with an increasing number of good quality studies in recent years. Despite this, the area remains under-researched and there is a lack of robust, high-quality research. Trypanosome spp., Echinococcus granulosus and Brucella spp. appeared most frequently in the literature. Pathogens with the highest reported prevalence were MERS-CoV (0-100%), Echinococcus granulosa (7-60%) and Rift Valley fever virus (7-57%). Exposure to Brucella spp., Coxiella burnetii and Crimean-Congo haemorrhagic fever virus showed higher levels in camel or camel-associated vectors than other livestock species, although brucellosis was the only disease for which there was robust evidence linking camel and human exposure. Zoonotic agents with less severe human health outcomes, such as Dermatophilosus congolensis and contagious ecthyma, were also represented in the literature. This review provides an important summary of the scope and quality of current knowledge. It demonstrates that further research, and improved adherence to robust study design and reporting are essential if the zoonotic risk from camels in Kenya, and elsewhere, is to be better understood.
| S-EPMC7559378 | biostudies-literature
Project description:BackgroundIn the arid and semi-arid areas of northern China, overexploitation of fertilizers and extensive irrigation with brackish groundwater have led to soil degradation and large areas of farmland have been abandoned. In order to improve the soil quality of abandoned farmland and make reasonable use of brackish groundwater, we conducted field trials in 2013 and 2014.MethodsIn our study, we used three fertilization modes (CF, chemical fertilizer; OM, organic manure and chemical fertilizer; NF, no fertilizer) and three deficit irrigation levels (I0: 0 mm; I75: 75 mm; I150: 150 mm).ResultsThe results showed that the activities of soil urease, alkaline phosphatase, invertase, catalase, and dehydrogenase in the OM treatment were significantly improved compared with those in the CF and NF treatments under the three deficit irrigation levels. Compared with NF, the OM treatment significantly increased soil organic carbon (SOC), water-soluble carbon (WSC), total nitrogen, microbial biomass carbon and nitrogen (MBC and MBN), and soil respiration rate, and significantly decreased soil C:N and MBC:MBN ratios and the metabolic quotient, thus improving the soil quality of abandoned farmland. Furthermore, the OM treatment increased alfalfa plant height, leaf area index, leaf chlorophyll content, and biomass yield. Under the CF and OM fertilization modes, the activities of urease and catalase in I150 were significantly higher than those in I0, whereas irrigating without fertilizer did not significantly increase the activity of these two enzymes. Regardless of fertilization, alkaline phosphatase activity increased with an increase in irrigation amount, whereas invertase activity decreased.DiscussionThe results showed that deficit irrigation with brackish groundwater under the OM treatment can improve soil quality. Over the two years of the study, maximum SOC, total nitrogen, WSC, MBC, and MBN were observed under the OM-I150 treatment, and the alfalfa biomass yield of this treatment was also significantly higher than that of the OM-I0 treatment. Therefore, the OM-I150 treatment could be used as a suitable measure not only to improve the quality of abandoned farmland soil but also to increase the alfalfa biomass yield in arid and semi-arid areas of northern China.
| S-EPMC5826988 | biostudies-literature
Project description:The peach (Prunus persica L.) is one of Tunisia's major commercial fruit crops and is considered one of the biggest water consumers of all crops. In warm and arid areas of southern Tunisia, irrigation is necessary to ensure orchard longevity and high yield and fruit quality. Nevertheless, under water-scarcity conditions and low water quality, water management should rely on efficient deficit irrigation strategies. In this study, sustained deficit irrigation (DI) and partial root-zone drying (PRD50) at 50% of crop evapotranspiration (ETc) were evaluated for their impact on the primary and secondary metabolites of the peach fruit of early cultivar Flordastar grown in the Tataouine region. A full irrigation (FI) treatment at 100%, etc., was used as a control treatment. Color, dry-matter content, firmness, organic acids, sugars, phenolic compounds, vitamin C, β-carotene and minerals were assessed on harvested mature fruits. Dry-matter content and firmness increased significantly under DI and PRD50 (13% and 15.5%). DI fruit had the highest soluble-solid content (SSC), reaching Brix values of 14.3°. Fruit sorbitol and sucrose contents were not affected by Di and PRD50. Higher glucose in fruit juice was observed in PRD50 (23%) and DI (21.5%) compared to FI, which had the highest malic acid content (33.5-37%). Quinic and citric acids decreased with DI and PRD50, while almost all individual phenolic compounds increased with deficit irrigation. Hydroxycinnamates and anthocyanins were significantly higher in fruits harvested from DI and PRD50 treatments. Proanthocyanidins (catechin and epicatechin) were only improved by DI, while flavone compounds and vitamin C were not affected by irrigation restrictions. β-carotene was higher in fruits yielded under FI (0.71 mg/100 g DM) than DI and PRD50 (0.21-0.43 mg/100 g DM). Macro- and micronutrients significantly increased in DI and PRD50 fruit. A significant difference between DI and PRD50 fruits was observed for Zn and Fe concentrations. This research highlights the positive impact of reduced irrigation on bioactive-fruit quality attributes and the suitability of PRD50 and DI as tools for irrigation management in arid areas of southern Tunisia, contributing to water-saving in orchards and the improvement of fruit commercial value.
| S-EPMC9269496 | biostudies-literature
Project description:Indaziflam, a broad-spectrum, pre-emergence herbicide was the focus of a field investigation conducted after the identification of sporadic injury symptoms on the pecan trees a few months after the application. The study was conducted in two pecan orchards located in southern New Mexico, USA, and southeastern Arizona, USA. The objectives of this study were to evaluate the occurrence and distribution of indaziflam in the soil profile of areas where pecan trees were injured (impacted) and areas where no injury symptoms were observed (unimpacted), and to determine the relationship between indaziflam concentrations and soil properties in those locations. Soil samples were collected, one year after applications, from six depth representing 0-7, 7-15, 15-30, 30-60, 60-90 and 90-120 cm depth to determine the concentration of indaziflam in impacted and unimpacted areas of the two orchards. Soil samples were analyzed to determine texture, bulk density, organic matter content, cation exchange capacity, pH, nitrate, chloride and calcium concentrations. The detection frequency of indaziflam was higher in Arizona than in New Mexico, likely due to the differences between the tillage practices and sand contents of the orchards. No significant correlations were observed between indaziflam and soil properties, however indaziflam was mostly detected in areas where pecan trees were unimpacted probably as result of greater organic matter content and soil porosity. More research is needed to understand the causes of injury to pecan trees by indaziflam application.
| S-EPMC4423937 | biostudies-other
Project description:Higher aridity and more extreme rainfall events in drylands are predicted under climate change. Yet it is unclear how changing precipitation regimes may affect nitrogen (N) cycling, especially in areas with extremely high aridity. Here we investigated soil N isotopic values (M-NM-415N) along a 3200 km aridity gradient and show a hump-shaped relationship between soil M-NM-415N and aridity index (AI) with a threshold at AI=0.32. Also, using a micro-array metageomics tool named GeoChip 5.0, we showed that Variations of nitrification and denitrification gene abundance along the gradient which provide further evidence for the existence of this threshold. Data support the hypothesis that the increase of gaseous N losses is higher than the increase of net plant N accumulation with increasing AI below AI=0.32, while the opposite is favoured above this threshold. Our results suggest the importance of N-cycling microbes in extremely dry areas and the different controlling factors of N cycling on the either side of the threshold.
2014-09-03 | E-MTAB-2722 | biostudies-arrayexpress
Project description:Background and Aims:The onset of xylogenesis plays an important role in tree growth and carbon sequestration, and it is thus a key variable in modelling the responses of forest ecosystems to climate change. Temperature regulates the resumption of cambial activity, but little is known about the effect of water availability on the onset of xylogenesis in cold but semi-arid regions. Methods:The onset of xylogenesis during 2009-2014 was monitored by weekly microcoring Juniperus przewalskii trees at upper and lower treelines on the north-eastern Tibetan Plateau. A logistic regression was used to calculate the probability of xylogenic activity at a given temperature and a two-dimensional reverse Gaussian model to fit the differences between the observed and estimated days of xylogenesis onset at given temperatures and precipitation within a certain time window. Key Results:The thermal thresholds at the beginning of the growing season were highly variable, suggesting that temperature was not the only factor initiating xylem growth under cold and dry climatic conditions. The onset of xylogenesis was well predicted for climatic thresholds characterized by a cumulative precipitation of 17.0 ± 5.6 mm and an average minimum temperature of 1.5 ± 1.4 °C for a period of 12 d. Conclusions:Xylogenesis in semi-arid regions with dry winters and springs can start when both critical temperature and precipitation thresholds are reached. Such findings contribute to our knowledge of the environmental drivers of growth resumption that previously had been investigated largely in cold regions without water shortages during early growing seasons. Models of the onset of xylogenesis should include water availability to improve predictions of xylem phenology in dry areas. A mismatch between the thresholds of temperature and moisture for the onset of xylogenesis may increase forest vulnerability in semi-arid areas under forecasted warmer and drier conditions.
| S-EPMC5853012 | biostudies-literature
Project description:A suitable irrigation method adopted to arid desert conditions, including a special soil structure and specialized plants, has been continuously studied and improved. A field study was conducted in the Awei irrigation area of Aletai in Xinjiang in 2015 and 2016 to investigate the applicability of shallow subsurface drip irrigation (SSDI) in an arid desert area. A completely randomized block design with three replications and three treatments for drip tape subsurface depths at 5, 10, 20 cm was established. The results indicated that the vertical distribution of the soil moisture of subsurface drip irrigation (SDI, buried depth at 20 cm) was mainly concentrated at 0-60 cm, while SSDI (buried depth at 5 and 10 cm) was concentrated at 0-30 cm. However, the roots distributions were concentrated at 0-30 cm for SDI and SSDI. The chlorophyll content and water consumption intensity for alfalfa first increased and then decreased in arid desert conditions. The dry yield and water use efficiency (WUE) of SSDI (buried depth at 10 cm) were higher than those of SDI. The SSDI was practical in arid desert conditions and the recommended buried depth was 10 cm.
| S-EPMC5898749 | biostudies-literature
Project description:The Mara River Basin in East Africa is a trans-boundary basin of international significance experiencing excessive levels of sediment loads. Sediment levels in this river are extremely high (turbidities as high as 6,000 NTU) and appear to be increasing over time. Large wildlife populations, unregulated livestock grazing, and agricultural land conversion are all potential factors increasing sediment loads in the semi-arid portion of the basin. The basin is well-known for its annual wildebeest (Connochaetes taurinus) migration of approximately 1.3 million individuals, but it also has a growing population of hippopotami (Hippopotamus amphibius), which reside within the river and may contribute to the flux of suspended sediments. We used in situ pressure transducers and turbidity sensors to quantify the sediment flux at two sites for the Mara River and investigate the origin of riverine suspended sediment. We found that the combined Middle Mara-Talek catchment, a relatively flat but semi-arid region with large populations of wildlife and domestic cattle, is responsible for 2/3 of the sediment flux. The sediment yield from the combined Middle Mara-Talek catchment is approximately the same as the headwaters, despite receiving less rainfall. There was high monthly variability in suspended sediment fluxes. Although hippopotamus pools are not a major source of suspended sediments under baseflow, they do contribute to short-term variability in suspended sediments. This research identified sources of suspended sediments in the Mara River and important regions of the catchment to target for conservation, and suggests hippopotami may influence riverine sediment dynamics.
| S-EPMC5805331 | biostudies-literature
Project description:Hantaviruses are zoonotic rodent-borne viruses that are known to infect humans and cause various symptoms of disease, including hemorrhagic fever with renal and cardiopulmonary syndromes. They have a segmented single-stranded, enveloped, negative-sense RNA genome and are widely distributed. This study aimed to investigate the circulation of rodent-borne hantaviruses in peridomestic rodents and shrews in two semi-arid ecologies within the Kenyan Rift Valley. The small mammals were trapped using baited folding Sherman traps set within and around houses, then they were sedated and euthanatized through cervical dislocation before collecting blood and tissue samples (liver, kidney, spleen, and lungs). Tissue samples were screened with pan-hantavirus PCR primers, targeting the large genome segment (L) encoding the RNA-dependent RNA polymerase (RdRp). Eleven of the small mammals captured were shrews (11/489, 2.5%) and 478 (97.5%) were rodents. A cytochrome b gene-based genetic assay for shrew identification confirmed the eleven shrews sampled to be Crocidura somalica. Hantavirus RNA was detected in three (3/11, 27%) shrews from Baringo County. The sequences showed 93-97% nucleotide and 96-99% amino acid identities among each other, as well as 74-76% nucleotide and 79-83% amino acid identities to other shrew-borne hantaviruses, such as Tanganya virus (TNGV). The detected viruses formed a monophyletic clade with shrew-borne hantaviruses from other parts of Africa. To our knowledge, this constitutes the first report published on the circulation of hantaviruses in shrews in Kenya.
| S-EPMC10221196 | biostudies-literature